Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_E22
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 34 0.069
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 34 0.069
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 33 0.21
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 32 0.37
10_02_0201 - 6764313-6765263 29 3.4
10_02_0132 + 5654369-5654596 28 4.6
05_03_0611 + 16171038-16171124,16171419-16171505,16173692-161737... 27 8.0
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 34.3 bits (75), Expect = 0.069
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = -3
Query: 543 EPRGANTVEDQQLRMVS-RFVNEAVLSLEEKILHNPLEGDVGAVXXXXXXXXXXXXFRWV 367
+P+ +D+ + M+ VNEA L+E + + DV ++ W
Sbjct: 615 DPKLPKLTDDEIVEMMLFPVVNEACRLLDEGVAMKASDLDVASIMGRGFPSYRGGVMFWA 674
Query: 366 DQYGADKLVKKMEEYQGLYGAPFKPAQTLVDMAK 265
D +GA + +++++ +G F+P + L A+
Sbjct: 675 DSFGAKYIYDRLKDWSKYHGGIFEPYEYLSTRAR 708
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 34.3 bits (75), Expect = 0.069
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = -3
Query: 486 VNEAVLSLEEKILHNPLEGDVGAVXXXXXXXXXXXXFRWVDQYGADKLVKKMEEYQGLYG 307
+NEA L E I + + D+ ++ W D GA ++ ++ E++ +G
Sbjct: 653 INEACQVLSEGIANKASDLDIASIFGMGFPPYRGGIVYWADSIGAKRIHARLSEWEMKHG 712
Query: 306 APFKPAQTLVDMAKD 262
F+P L + A +
Sbjct: 713 QLFRPCSYLSERAAE 727
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 262 VFGHIYKGLSWFEWSAIKTLVFLHFLY 342
++G I+ L FEW+A+K L +L F+Y
Sbjct: 1273 IYGTIFYSLGSFEWTAVKFLWYLFFMY 1299
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -3
Query: 486 VNEAVLSLEEKILHNPLEGDVGAVXXXXXXXXXXXXFRWVDQYGADKLVKKMEEYQGLYG 307
+NEA L+E I + D+ ++ W D GA + K+E + Y
Sbjct: 638 INEACRVLDEGIAVKASDLDIASIFGMGFPPYRGGIMFWADSIGAKYIHDKLEVWAKRYS 697
Query: 306 APFKPAQTLVDMA 268
FKP L + A
Sbjct: 698 DIFKPCSYLAERA 710
>10_02_0201 - 6764313-6765263
Length = 316
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 253 FTCVFGHIYKGLSWFE 300
F C+FG +YK L+W E
Sbjct: 284 FLCIFGKVYKFLAWME 299
>10_02_0132 + 5654369-5654596
Length = 75
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 389 VNGGKPRPKTAPTSPSRGLCRIFSSNDNTASFTNLETIRSCWSSTV 526
V+G + + RG R+ + AS T +ET+RSC S ++
Sbjct: 14 VDGSHEDTRMPMSDDERGYFRLVGEITSPASMTIMETLRSCGSESM 59
>05_03_0611 +
16171038-16171124,16171419-16171505,16173692-16173746,
16174277-16174647
Length = 199
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 235 SVLIEFFTCVFGHIYKG-LSWFEWSAIKTLVF 327
S ++ FFTCV G++ KG LS E K LV+
Sbjct: 128 SSVLRFFTCVTGYLEKGKLSDIEGLKTKVLVW 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,538
Number of Sequences: 37544
Number of extensions: 313815
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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