Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E21
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...   255   5e-69
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   1.8  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   1.8  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   4.2  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    25   7.4  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  255 bits (624), Expect = 5e-69
 Identities = 114/142 (80%), Positives = 128/142 (90%)
 Frame = -1

Query: 617 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 438
           MSY L HLH+GW VDQAILSE++R+VVIRFG D D  C+K DEVLY IAEKV N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 437 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVY 258
           VDI EVPDFNKMYELYD  T+MFF+RNKH+MIDLGTGNNNKINWPLEDKQEMIDIIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 257 RGARKGRGLVVSPKDYSTKYRY 192
           RGARKG+GLV+SPKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
 Frame = -1

Query: 638 IK*FICKMSYMLGHLHNGWQVDQAILSEEDRVVVIR---------FGHDWDPTCMKMDEV 486
           IK FI  M Y+  HL +G   D++ +   D    +          F  DW+   +K ++ 
Sbjct: 319 IKAFI-PMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN-VKKNDT 376

Query: 485 LYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-MIDLGTGNNNKIN 309
            Y I   +      +  DI   P+  + Y   +   V  F     I ++D G    N   
Sbjct: 377 YYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDLVDGGEDRENIPL 436

Query: 308 WPLEDKQEMIDII 270
           WPL   Q  +D++
Sbjct: 437 WPLLHPQRFVDVV 449


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
 Frame = -1

Query: 638 IK*FICKMSYMLGHLHNGWQVDQAILSEEDRVVVIR---------FGHDWDPTCMKMDEV 486
           IK FI  M Y+  HL +G   D++ +   D    +          F  DW+   +K ++ 
Sbjct: 319 IKAFI-PMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN-VKKNDT 376

Query: 485 LYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-MIDLGTGNNNKIN 309
            Y I   +      +  DI   P+  + Y   +   V  F     I ++D G    N   
Sbjct: 377 YYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDLVDGGEDRENIPL 436

Query: 308 WPLEDKQEMIDII 270
           WPL   Q  +D++
Sbjct: 437 WPLLHPQRFVDVV 449


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 382 HGSYNSYILLKSGTSVMSTK 441
           HG+Y+SY  ++ GTS++  +
Sbjct: 6   HGNYHSYYSMRGGTSIIDPR 25


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 551 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCT 378
           D+V V+ F  DW   C  +   L  ++E+ +  +F  +     +++   N +Y L  P  
Sbjct: 35  DKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYAL--PTM 92

Query: 377 VMF 369
           V+F
Sbjct: 93  VLF 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,113
Number of Sequences: 5004
Number of extensions: 56889
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)