Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_E21
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836 247 7e-66
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 239 1e-63
11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872 65 4e-11
06_03_0752 - 24171847-24174321 31 0.62
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 31 1.1
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372... 30 1.9
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 29 4.4
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 4.4
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418... 28 5.8
>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
Length = 168
Score = 247 bits (604), Expect = 7e-66
Identities = 119/168 (70%), Positives = 133/168 (79%), Gaps = 26/168 (15%)
Frame = -1
Query: 617 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMK-------------------- 498
MSY+L HLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQICCGDDLDSFARFRILWREL 60
Query: 497 ------MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDL 336
MDEVL ++AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDL
Sbjct: 61 SVYLTTMDEVLAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDL 120
Query: 335 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 192
GTGNNNKINW L+DKQE IDI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 121 GTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 168
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 239 bits (586), Expect = 1e-63
Identities = 108/131 (82%), Positives = 120/131 (91%), Gaps = 2/131 (1%)
Frame = -1
Query: 617 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMK--MDEVLYSIAEKVKNFAVI 444
MSY+L HLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+ MDEVL ++AE +KNFAVI
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQGMMDEVLAAVAETIKNFAVI 60
Query: 443 YLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIET 264
YLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINW L+DKQE IDI+ET
Sbjct: 61 YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 120
Query: 263 VYRGARKGRGL 231
VYRGARKGRGL
Sbjct: 121 VYRGARKGRGL 131
>11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872
Length = 130
Score = 65.3 bits (152), Expect = 4e-11
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Frame = -1
Query: 614 SYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV 435
S +L L +VD AI D+V+V+RFG D C+ +D++L + + FA + LV
Sbjct: 3 SALLPTLRRKPEVDAAIRDTLDKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALV 62
Query: 434 DI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIE 267
D+ E+ + +++ +FFF +H+ +D GT ++ K KQ+ ID++E
Sbjct: 63 DMDSEEMQVYIDYFDITLVPATIFFFNAQHMKMDSGTPDHTKWIGSFSSKQDFIDVVE 120
>06_03_0752 - 24171847-24174321
Length = 824
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -1
Query: 419 PDFNKMY--ELYDPCTVMFF--FRNKHIMIDLGTGNN 321
P +N+ Y E++DPCTV+ F N H+ G GNN
Sbjct: 450 PTWNEQYTWEVFDPCTVITIGVFDNNHLGNGNGNGNN 486
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 318 IVVASPQVNHYVFVAEEEHHCAW 386
+V P+VN ++F EE HH W
Sbjct: 46 VVSLDPEVNRFIFQQEEPHHVQW 68
>08_02_1625 +
28336168-28336409,28336491-28336564,28337162-28337236,
28337433-28337459,28339261-28339634,28339746-28340492
Length = 512
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 320 CCCQSPSQSLCVCCGRRTSLCMDRIIHTFY*NLEP 424
CC Q P + +C T LC DR ++ F+ N P
Sbjct: 439 CCGQGPYNGVGLCTALST-LCPDRSLYVFWDNFHP 472
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = -1
Query: 599 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV 420
H + W + + ++VVI F W C + V +A+K N AV VD+ E+
Sbjct: 18 HSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTN-AVFLKVDVDEL 76
Query: 419 PDFNKMYELYDPCTVMF 369
+ + + T +F
Sbjct: 77 KPIAEQFSVEAMPTFLF 93
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 402 HFIKIWNLCNVN*IYDSKIFYFFR 473
H I++W+LC+V+ I+ ++ + FR
Sbjct: 774 HIIQLWDLCHVSIIHRTQFYLLFR 797
>07_03_1550 +
27641099-27641288,27641433-27641646,27641738-27641843,
27642213-27642257,27642275-27642540,27642980-27642991,
27643201-27643480,27643716-27643823,27644276-27644362,
27644448-27644552,27644995-27645125,27645249-27645309
Length = 534
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = -1
Query: 620 KMSYMLGHL-HNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVI 444
+M + + H H G + + E R+V + + C + +L + ++
Sbjct: 423 EMGFDISHTKHRGQYALRKVYHESPRLVCVLYTSPTCGPCRTLKPILSKVIDEYNEHVHF 482
Query: 443 YLVDITEVPDFNKMYELY-DPCTVMFFFRNKHIM 345
+DI E P+ + + PC + FF+NK ++
Sbjct: 483 VEIDIEEDPEIAEAAGIMGTPC--VQFFKNKEML 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,219
Number of Sequences: 37544
Number of extensions: 322744
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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