Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E21
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.21 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 645 IIHKVVYLQNELYARPSTQWLASRSGHSIRRRPCSGYK 532
           +IH++VY QNE Y +PS + L   +         S YK
Sbjct: 338 LIHRLVYFQNE-YEQPSEEDLKRITNQPSEGEDISDYK 374


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 323 CCQSPSQSLCVCCGRRTSLCMDRIIHT 403
           CC SP  + C      T+ C++ +  T
Sbjct: 163 CCNSPENNTCSISNSYTNGCVEALKDT 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,995
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)