Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_E17
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 238 3e-63
05_05_0209 - 23282848-23284110 29 4.1
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.2
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 7.2
05_03_0186 + 9365179-9365342,9367332-9367403,9368362-9368433,936... 28 9.5
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041... 28 9.5
04_03_0873 + 20455860-20456042,20456864-20457102,20457596-204576... 28 9.5
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 238 bits (583), Expect = 3e-63
Identities = 124/203 (61%), Positives = 144/203 (70%), Gaps = 5/203 (2%)
Frame = -3
Query: 773 VCVVAGYGDVGKGCAQAFKGFGGRVIVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVT 594
V VV GYGDVGKGCA A K G RVIVTEIDPI ALQA MEG QV T+E+ IFVT
Sbjct: 230 VAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVVSEADIFVT 289
Query: 593 TTGNIDIICKEHLLRMKDDAIVCNIGHFDCEIDVAWLDN--NAKKVNIKQHVDRYEL-EN 423
TTGN DII +H+ +MK++AIVCNIGHFD EID+ L+ K++ IK DR+ E
Sbjct: 290 TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPET 349
Query: 422 GNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADT--YPIGVHTLPKKL 249
IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW + T Y V+ LPK L
Sbjct: 350 NTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHL 409
Query: 248 DEEVAALHLDHLGVKLTKLTPKQ 180
DE+VA LHL LG +LTKL+ Q
Sbjct: 410 DEKVACLHLGKLGARLTKLSKSQ 432
>05_05_0209 - 23282848-23284110
Length = 420
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -3
Query: 773 VCVVAGYGDVGKGCAQA--FKGFGGRVIVTEIDPINALQAAMEGFQVTTMEEAAEVGQ-I 603
V V+GY D+GKG A FK G ++VT + + + M A++ +
Sbjct: 37 VAGVSGYKDIGKGAATTLLFKAGGFSLLVTFVSAVVLMHFQMHQPPAAPRSRCADLSSAV 96
Query: 602 FVTTTG 585
V+ TG
Sbjct: 97 LVSLTG 102
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 602 FVTTTGNIDIICKEHLLRMKDDAIVCNIGHF 510
F+ D+ K H++RMK A +CN HF
Sbjct: 289 FLNAQSTNDMFAKLHVVRMKKVACLCNEMHF 319
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 563 EHLLRMKDDAIVCNIGHFDCEIDVAWLDNNAKKVNIKQHVDRYELENGNHIIVLAAGRLV 384
+H + DDA+ HFD + + A L + + + + RY+ E N ++ A LV
Sbjct: 2755 KHFIPSDDDALSLVYKHFDMKHEAASLLESRAEQYMNSWLSRYDKERRNDELLEAMHHLV 2814
Query: 383 NL 378
+
Sbjct: 2815 EM 2816
>05_03_0186 +
9365179-9365342,9367332-9367403,9368362-9368433,
9368719-9368790,9368889-9368954,9369043-9369114,
9369716-9369790,9370059-9370124,9370360-9370404,
9370713-9371064,9371147-9371393,9371418-9371576,
9371659-9371807,9371878-9372088,9372242-9372473,
9372557-9372707,9373147-9373494
Length = 850
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +3
Query: 399 SKNNNMVTIF*FITINMLFDVNFFCVVI*PCNINFAIKVTNVAHNCIVLHSKKMFFAYNV 578
S+N V F + MLF N + P I+ ++KV N+ N IVL S K N
Sbjct: 181 SENLETVDFSKFAALTMLFLGNNSLIGTLPDVISSSLKVMNLVANNIVLGSTK-----NS 235
Query: 579 NISRRG 596
+IS RG
Sbjct: 236 DISTRG 241
>04_03_1037 -
21901989-21902468,21903308-21903526,21903984-21904106,
21904225-21904392
Length = 329
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 293 ADTYPIGVHTLPKKLDEEVAALHLDHLGVKLTKLTPKQAKYIGVSRE 153
A T+ H P+KLDE+V +G +++ +PK + G E
Sbjct: 192 AQTHDNTKHAKPEKLDEKVQDAKTSKVGAEVSDRSPKHKRDSGEGAE 238
>04_03_0873 +
20455860-20456042,20456864-20457102,20457596-20457692,
20457816-20457857,20458060-20458186,20458879-20458991,
20459063-20459126,20459218-20459311,20459393-20459501,
20459803-20459859,20460064-20460126,20460158-20460195,
20460835-20461028,20461266-20461477
Length = 543
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 458 IKQHVDRYELENGNHIIVLAAGRLVNLGCATGHS-SFVMSNSF 333
+++ V ++ EN ++VL + LV+LGCATG V S+ F
Sbjct: 383 LQEEVLPFQKENQQVVLVLTSS-LVHLGCATGQERENVQSDDF 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,840
Number of Sequences: 37544
Number of extensions: 381995
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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