Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E15
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    28   1.5  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   2.0  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   4.7  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   6.2  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 171 YNYYYSNYKQQL**YTSNMSH-NNFKNHICNFNFA 272
           Y ++ +     L  ++SN++H NN +  ICNFN A
Sbjct: 107 YTHHNAEPLHDLQTFSSNLNHSNNRRQTICNFNMA 141


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 527 ICKIQFFESFTITFHLKYNAILFNFYMFXIVXPYFK 634
           +C   FF  FTI F   +  ++  F +  ++ PY++
Sbjct: 367 LCMRNFFPGFTIYFPALFLGVVGTFLIAPVIVPYWR 402


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 434 TLRKLSNSDVVFTFKKTFNIIRRQNIMS---YQNICKIQFFESFTITFHLKYN 583
           T+  +    V+F      NII R    S   ++ +C++   + F +TF   Y+
Sbjct: 511 TITLVCQQPVIFDMTIRENIIMRNENASESDFEEVCRLALVDEFALTFDQSYD 563


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 444 NCLIAMLYSHLKKHSILF 497
           NCL A LY H  KHS +F
Sbjct: 35  NCLAATLYLHGYKHSSVF 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,778
Number of Sequences: 5004
Number of extensions: 43291
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)