Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E15
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110...    29   2.8  
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    29   3.7  

>08_01_0139 +
           1105857-1107008,1107124-1107328,1107583-1107768,
           1107924-1108133,1108552-1109186
          Length = 795

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 16  SSAAHIFSAVIGCFVSKKNRPCHH 87
           +SAA IF+A + C  S  N+PC H
Sbjct: 197 TSAARIFAASLNCHSSGGNQPCGH 220


>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 16  SSAAHIFSAVIGCFVSKKNRPC 81
           +SAA IFSA + C    +N+PC
Sbjct: 383 TSAARIFSAALSCVAIGENKPC 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,681
Number of Sequences: 37544
Number of extensions: 194836
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)