Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E14
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    29   2.8  
AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine re...    28   4.9  
AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 24/80 (30%), Positives = 43/80 (53%)
 Frame = -2

Query: 468 IC*HFV**LIKQLIKQFNNNTHYNPNVFVIYALRHRIKQNVLLLYFEFNFYFCLVLRTVS 289
           IC HF+   +K  I  F++N  Y    FVI+ + H I  NVLL+++  + +F  ++ +  
Sbjct: 255 IC-HFLCTSVK-FINLFSHN--YVQFQFVIFKIIHHI-SNVLLVFYSASTFFIYLIFS-E 308

Query: 288 KIVNLLTFCLISYKPADQTI 229
           K  N+L+ C+      + T+
Sbjct: 309 KYRNVLSTCVTCRNTDELTV 328


>AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein109 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 354 QNVLLLYFEFNFYFCLVLRTVSKIVNLLTFCLISYK 247
           QNVL L  ++ F    +L  +S I+NLL F +I+ K
Sbjct: 14  QNVLNLLEKYAFLVQFILAIISFILNLLHFVIITRK 49


>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 444 LIKQLIKQFNNNTHYN-PNVFVIYALRHRIKQNVLLLYFEFNFYFCLVLRTVSKIVNL 274
           + K+++ QF   +H+N P  F    +R  IK+ V +L F   + F  VL     IVN+
Sbjct: 361 MTKKIMFQFPKISHFNFPKQFCRIIIR--IKKQVKILSFHKIYCFKFVLYNTRTIVNI 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,204,491
Number of Sequences: 27780
Number of extensions: 185282
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)