Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_E10
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 45 3e-06
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 27 0.69
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 2.1
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 3.7
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 25 3.7
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 3.7
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 3.7
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 3.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 4.9
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 24 6.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 6.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 24 8.5
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 8.5
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 45.2 bits (102), Expect = 3e-06
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = -1
Query: 322 FLYQAHLYLGLMLMCGFVLFDTXLIIEKRRMGSKDFVXHALELFIDFIGMFRRLVIIL 149
F+ A G ++ CG++LFDT I+ R ++F+ +L L++DFI +F R++ IL
Sbjct: 202 FIDMAFAGFGTLVFCGYILFDTYNIL--HRYSPEEFIMSSLMLYLDFINLFIRILQIL 257
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.5 bits (58), Expect = 0.69
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 269 YKTAHEHEAKIKMSLVQENV 328
Y TAH +E K K+ L+QE V
Sbjct: 291 YPTAHPYEIKTKLYLIQEGV 310
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 348 VNLXYAVTFSCTKLIFILASCSCAVLYC 265
V+L YA+ FS + F LAS AV+ C
Sbjct: 855 VSLTYALDFSLERRFFELASLCRAVICC 882
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 324 FSCTKLIFILASCSCAVLYCSTHX*SLRN 238
+ CT L FIL +C C++ + +RN
Sbjct: 448 WGCTLLAFILLACGCSLPILFKYGKQIRN 476
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 295 QDKDELGTRKCDCIXQINQ 351
++K +G RKCDC +IN+
Sbjct: 130 REKFLVGKRKCDCNDEINE 148
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.0 bits (52), Expect = 3.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 322 FLYQAHLYLGLMLMCGFVLFDTXLIIEKRRMGSKDFVXHAL 200
FL+ A + L+L+ F + L +E RR +KD V L
Sbjct: 342 FLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKDDVRKVL 382
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 324 FSCTKLIFILASCSCAVLYCSTHX*SLRN 238
+ CT L FIL +C C++ + +RN
Sbjct: 448 WGCTLLAFILLACGCSLPILFKYGKQIRN 476
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 324 FSCTKLIFILASCSCAVLYCSTHX*SLRN 238
+ CT L FIL +C C++ + +RN
Sbjct: 448 WGCTLLAFILLACGCSLPILFKYGKQIRN 476
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 337 LCSHIFLYQAHLYLGLMLMCGFVLF--DTXL 251
L SH+ ++Q + LG+M + VLF DT L
Sbjct: 699 LGSHLCIWQPKILLGIMYVTDLVLFFLDTYL 729
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 24.2 bits (50), Expect = 6.4
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 229 GSKDFVXHALELFID 185
G++DF+ HA+ L++D
Sbjct: 179 GTQDFIGHAMALYLD 193
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 271 VLFDTXLIIEKRRMGSKDFVXHALELFIDFIG 176
VL DT I+ R + S+D AL F+G
Sbjct: 1655 VLIDTCHILRSRSLESRDATRKALAAISKFLG 1686
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 23.8 bits (49), Expect = 8.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 150 KIITSLLNIPIKSMNNSNACXTKSLLPILRFSMISXVSNSTKPHMSM 290
K I+ L+NIP S NNS A K + + IS S ++S+
Sbjct: 490 KGISELINIPFVSANNSMADDEKG-RNLKNLTQISTSSTPAHDNLSL 535
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 333 AVTFSCTKLIFILASCSCAVLY 268
AVTF TK+I +A+C + LY
Sbjct: 900 AVTFIATKIISRIANCVKSKLY 921
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,593
Number of Sequences: 5004
Number of extensions: 25988
Number of successful extensions: 69
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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