Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_E07
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 167 2e-42
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 33 0.045
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 3.9
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 5.1
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 6.8
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 25 9.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.0
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 167 bits (405), Expect = 2e-42
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 1/207 (0%)
Frame = -3
Query: 763 NVETIAVAXTICRRGGKWFASFGRQRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIERH 584
NVET++ I ++G K+F S GR N GTKLF+ISG VN P +E MSIPLK+LIE +
Sbjct: 242 NVETVSNLPAIIKKGPKFFISMGRPNNRGTKLFSISGEVNEPNVIEACMSIPLKDLIENY 301
Query: 583 AGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDI 404
AGGV GGW+ L+ I PGG + ++ KN CE V MDFD L A +SLGT ++IV++ I
Sbjct: 302 AGGVRGGWNKLVGIFPGGPCSGILNKNQCEQVTMDFDSLKALDSSLGTGSVIVLNDHDQI 361
Query: 403 VKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI-DMLWEISKQIEGH 227
+++ FY +C C CR+GV + + + DG+A ++ DM + +
Sbjct: 362 FESLLNFAKFYSTNTCHTCPVCRDGVEDVIETLKGLKDGHAHLSQLKDMFSKFNMPSSSK 421
Query: 226 TICALGDGAAWPVQGLIRHFRPELERR 146
C GD + + R+F ++ R
Sbjct: 422 VFCGFGDSMRHQIHSIQRNFPDQITFR 448
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 33.1 bits (72), Expect = 0.045
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +2
Query: 500 DVLGYERGGGPSWYDGEQVVPAA---GDSARVPLNELLE-RDAHLLLHGARRVHVTRYIE 667
DV+ GP WY GE+V A G+S P+N D H+ ++ H TR +E
Sbjct: 304 DVIQVSEQLGPDWYMGEKVNSKAEKLGNSGMFPVNYCTRIYDLHV-----QKSHETRSLE 358
Query: 668 QLRA--RVTLAPER--CEPLAATPTDRXRYRD 751
+ R+ R+ R C P+ +P ++ D
Sbjct: 359 RARSIRRIVSDDPRDYCSPIKQSPIQNLKFLD 390
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 319 MNKIIYRFVDGNASPKEIDMLWEISKQIEG 230
+NK + ++VD +P E L+EIS Q+EG
Sbjct: 217 INKPVTKYVDN--TPVEFGWLYEISYQLEG 244
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 214 LGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY**CNTRRTSTXH 59
LGD + Q L ++E + E ++ GP+ +R+Y +++ST H
Sbjct: 867 LGDEYLYSEQSLNHEEEEQMEEELSEIFSSGGPNVVDRVY----LKKSSTRH 914
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -3
Query: 409 DIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE 233
D+V+A+ R+ + Y + GQ GV W+ + + P+ + ++E++K E
Sbjct: 709 DVVEAMFRIALIYLNGLLGQKRNISLGVQWLERAC-----KSKGPESVRAMYELAKIYE 762
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 748 AVAXTICRRGGKWFASFGRQR 686
A+ T CR GKWF + R R
Sbjct: 234 ALLVTDCRSDGKWFLQYRRLR 254
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 328 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 176
VSW NK+ + GNA+ E +W++ + + + LG G +
Sbjct: 168 VSWNNKVSHILASGNAT--EYTTVWDVKLKRQVLNLSYLGAAGVSAATGAV 216
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = +3
Query: 378 MMSRAMAFTMSVDLSMTMMAAVPREVCAATRPSKSINTVSQTFLGMSGVEDPPGMMASRL 557
M +R + ++ T +A++P+ S TV+ S + P +A+ +
Sbjct: 1031 MQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPS--TVTSAASSPSNISKPSAPVANNV 1088
Query: 558 SQPPVTPP 581
S+P PP
Sbjct: 1089 SKPSAVPP 1096
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,984
Number of Sequences: 5004
Number of extensions: 63108
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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