Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_E07
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical pr... 388 e-108
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 38 0.010
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 2.7
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 29 4.8
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr... 29 4.8
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 29 4.8
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 29 4.8
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 29 4.8
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 29 4.8
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical pr... 28 6.3
U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical pr... 28 6.3
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 28 6.3
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 28 6.3
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 28 6.3
AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core alpha1,3... 28 6.3
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 28 6.3
AF003134-5|AAB54139.1| 357|Caenorhabditis elegans Nek (never in... 28 6.3
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 28 6.3
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 28 6.3
Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical pr... 28 8.4
U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical pr... 28 8.4
AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans GDP-4-keto-6-... 28 8.4
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 28 8.4
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 28 8.4
>Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical
protein C09H10.3 protein.
Length = 479
Score = 388 bits (954), Expect = e-108
Identities = 172/210 (81%), Positives = 190/210 (90%)
Frame = -3
Query: 763 NVETIAVAXTICRRGGKWFASFGRQRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIERH 584
NVET+AVA TICRRGG WFASFGR+RN GTKLF ISG VN PCTVEEEMS+PLK+LIERH
Sbjct: 255 NVETVAVAPTICRRGGDWFASFGRERNRGTKLFCISGQVNNPCTVEEEMSVPLKDLIERH 314
Query: 583 AGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDI 404
GGV GGWDNLLAIIPGGSS PL+PKNVC+TVLMDFD LVAAQ+ LGTAA+IVM+K TDI
Sbjct: 315 CGGVIGGWDNLLAIIPGGSSVPLMPKNVCDTVLMDFDALVAAQSGLGTAAVIVMNKQTDI 374
Query: 403 VKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHT 224
VK IARL +FYKHESCGQCTPCREG +W+NK+++RFVDG A P EIDM+WE+SKQIEGHT
Sbjct: 375 VKCIARLSLFYKHESCGQCTPCREGCNWLNKMMWRFVDGKAKPSEIDMMWELSKQIEGHT 434
Query: 223 ICALGDGAAWPVQGLIRHFRPELERRMQEY 134
ICALGD AAWPVQGLIRHFRPELERRM E+
Sbjct: 435 ICALGDAAAWPVQGLIRHFRPELERRMAEF 464
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/94 (26%), Positives = 29/94 (30%)
Frame = -2
Query: 656 GSREHAVHRGGGDEHPAQGAH*EARGRSHRRLGQPARHHTRRVLHPAHTQERLRDSIDGL 477
GS H G EH AH G G HH H H + G
Sbjct: 495 GSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGS 554
Query: 476 RRSSSRADLPGHGGHHCHGQVN*HREGHRSTHHV 375
S + GH G H H + GH +H V
Sbjct: 555 HHSPAH---HGHHGEHHHAPAHHGHHGHHGSHGV 585
Score = 34.7 bits (76), Expect = 0.073
Identities = 27/97 (27%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Frame = -2
Query: 644 HAVHRGGGDEHPAQGAH*EARGRSHRRLGQ-------PARHHTRRVLHPAHTQERLRDSI 486
H H+ G EH AH + G HR G+ PA H H H + +
Sbjct: 381 HHEHKEG--EHHEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAH 438
Query: 485 DGLRRSSSRA-DLPGHGGHHCHGQVN*HREGHRSTHH 378
G S P H GHH GH HH
Sbjct: 439 HGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHH 475
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/105 (25%), Positives = 31/105 (29%), Gaps = 1/105 (0%)
Frame = -2
Query: 656 GSREHA-VHRGGGDEHPAQGAH*EARGRSHRRLGQPARHHTRRVLHPAHTQERLRDSIDG 480
G HA H G EH AH G G HH+ H H + + G
Sbjct: 459 GEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSP-AHHGHHGEHHHAPAHHG 517
Query: 479 LRRSSSRADLPGHGGHHCHGQVN*HREGHRSTHHVLQARVLRPVH 345
GH G H H + G THH P H
Sbjct: 518 --HHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAH 560
Score = 33.1 bits (72), Expect = 0.22
Identities = 26/94 (27%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
Frame = -2
Query: 656 GSREHA-VHRGGGDEHPAQGAH*EARGRSHRRLGQPARHHTRRVLHPAHTQERLRDSIDG 480
G HA H G H + G H SH HH H H G
Sbjct: 565 GEHHHAPAHHGHHGHHGSHGVH-HGHHESHGHGHHAPAHHGHHGEHGVH---------HG 614
Query: 479 LRRSSSRADLPGHGGHHCHGQVN*HREGHRSTHH 378
+ A HG HH H + H E H HH
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHH 648
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 446 GHGGHHCHGQVN*HREGHRSTHHV 375
GH HH HG H E H HHV
Sbjct: 79 GHHTHHAHGAHPGHHEVHHHHHHV 102
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/105 (25%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Frame = -2
Query: 647 EHAVH-RGGGDEHPAQG--AH*EARGRSHRRLGQPARHHTRRVLHPAHTQERLRDSIDGL 477
EH VH R G+ H AH G H G+ H +H + G
Sbjct: 398 EHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGH 457
Query: 476 RRSSSRADLP-GHGGHHCHGQVN*HREGHRSTHHVLQARVLRPVH 345
A GH G H H + G THH P H
Sbjct: 458 HGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAH 502
Score = 29.1 bits (62), Expect = 3.6
Identities = 27/106 (25%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Frame = -2
Query: 677 HEAVQYIGSREHAVHRGGGDEHPAQGAH*EARGRSHRRLGQPARHHTRRVLHPA---HTQ 507
H G H H G H H E G H G HH H + H
Sbjct: 612 HHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHH--GSHGVHHGHHGTHHSLAHHGH 669
Query: 506 ERLRDSIDGLRRSSSRADLPGHGGHHCHGQVN*HREGH---RSTHH 378
+ G S + HG HH HG + GH + HH
Sbjct: 670 HGGHGTHHGAHHSPAHHG--HHGAHHEHGAHHGAHHGHHDDKENHH 713
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 440 GGHHCHGQVN*HREGHRSTHH 378
GGHH H + H E H HH
Sbjct: 40 GGHHGHVDTHHHEESHHGEHH 60
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/92 (28%), Positives = 29/92 (31%)
Frame = -2
Query: 656 GSREHAVHRGGGDEHPAQGAH*EARGRSHRRLGQPARHHTRRVLHPAHTQERLRDSIDGL 477
G H H G G + G G H R G+ H R R G
Sbjct: 251 GRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRHGGHGRH---GSCSGSPRGRHGHGGH 307
Query: 476 RRSSSRADLPGHGGHHCHGQVN*HREGHRSTH 381
SR+ P GG H HG HR G H
Sbjct: 308 GGHGSRSGSP--GGRHGHGGSGHHRGGRHGGH 337
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/84 (29%), Positives = 27/84 (32%)
Frame = -2
Query: 629 GGGDEHPAQGAH*EARGRSHRRLGQPARHHTRRVLHPAHTQERLRDSIDGLRRSSSRADL 450
GG H G H G R G H R H H + S G R R
Sbjct: 250 GGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRHGGHGRH---GSCSGSPRG--RHGH 304
Query: 449 PGHGGHHCHGQVN*HREGHRSTHH 378
GHGGH R GH + H
Sbjct: 305 GGHGGHGSRSGSPGGRHGHGGSGH 328
Score = 28.7 bits (61), Expect = 4.8
Identities = 33/103 (32%), Positives = 34/103 (33%), Gaps = 17/103 (16%)
Frame = -2
Query: 635 HRGGGDEHPAQGAH*EARGRSHRRLGQPARHHTRRVLH-PAHTQERLRDSIDGLRRSSSR 459
H GG H G H GR R G P H H P H R G R S R
Sbjct: 321 HGHGGSGHHRGGRH-GGHGRHGSRSGSPGGRHGHGGRHGPPHCPGR--HGRHGSRSHSPR 377
Query: 458 ADLPG--HGGHHC------HGQVN*H--------REGHRSTHH 378
G HG HC HG + H R GH HH
Sbjct: 378 GHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHH 420
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
protein C10C6.1 protein.
Length = 1565
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -1
Query: 225 RSALWATEPRGRCRDSYVTSGPSSSDACRSTRPHTDRAKPSACTSSAIRAERQRXTLRGS 46
RS+L ++P+ S S +S+ + + A S TSSA R+ R +L S
Sbjct: 68 RSSLGHSDPQ--LSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRSPANRPSLHSS 125
Query: 45 KEPLXRERC 19
P+ +RC
Sbjct: 126 TSPVTLQRC 134
>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
protein T13H2.5b protein.
Length = 1092
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 91 TSTGARLCSVRVRPSTPACVARARAGSD 174
T +R CS RPS+P+ V R R GSD
Sbjct: 19 TRRPSRPCSSYDRPSSPSVVIRERLGSD 46
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 91 TSTGARLCSVRVRPSTPACVARARAGSD 174
T +R CS RPS+P+ V R R GSD
Sbjct: 1398 TRRPSRPCSSYDRPSSPSVVIRERLGSD 1425
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -1
Query: 225 RSALWATEPRGRCRDSYVTSGPSSSDACRSTRPHTDRAKPSACTSSAIRAERQRXTLRGS 46
RS+L ++P+ S S +S+ + + A S TSSA R+ R +L S
Sbjct: 68 RSSLGHSDPQ--LSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRSPANRPSLHSS 125
Query: 45 KEPLXRERC 19
P+ +RC
Sbjct: 126 TSPVTLQRC 134
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 558 TTCSPSYQEGPPPRSYPRTSARQ 490
TT +PS GPPP+ +PR +Q
Sbjct: 1318 TTTTPSSAGGPPPKLHPRRMTQQ 1340
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 558 TTCSPSYQEGPPPRSYPRTSARQ 490
TT +PS GPPP+ +PR +Q
Sbjct: 1318 TTTTPSSAGGPPPKLHPRRMTQQ 1340
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 570 PAAGTTCSPSYQEGPPPRSYP 508
PA G Y+E PPP SYP
Sbjct: 84 PARGAYDEGDYKEAPPPTSYP 104
>Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical
protein K08F8.3 protein.
Length = 433
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 285 LPSTNLYIILFIQETPSRQGVHWPQ 359
+P N Y++ F QE+P+ G+ P+
Sbjct: 165 VPKPNQYVVYFSQESPANSGIQIPR 189
>U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical
protein K10B2.5 protein.
Length = 1009
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 546 PSYQEGPPPRSYPRTSARQY*WTS 475
P + PPP S P S R Y WTS
Sbjct: 12 PPQLKSPPPMSSPLDSNRSYRWTS 35
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 468 RPSKSINTVSQTFLGMSGVEDPPGMMASRLSQPPVTP 578
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 468 RPSKSINTVSQTFLGMSGVEDPPGMMASRLSQPPVTP 578
RP K + T S G PP + +LS PP++P
Sbjct: 91 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 126
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 468 RPSKSINTVSQTFLGMSGVEDPPGMMASRLSQPPVTP 578
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core
alpha1,3-fucosyltransferase protein.
Length = 433
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 285 LPSTNLYIILFIQETPSRQGVHWPQ 359
+P N Y++ F QE+P+ G+ P+
Sbjct: 165 VPKPNQYVVYFSQESPANSGIQIPR 189
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 468 RPSKSINTVSQTFLGMSGVEDPPGMMASRLSQPPVTP 578
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AF003134-5|AAB54139.1| 357|Caenorhabditis elegans Nek (never in
mitosis kinase) likeprotein 2 protein.
Length = 357
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 150 DACRSTRPHTDRAKPSACTSSAIRAERQRXTLR 52
D R P TD+ KPSA SS +R + TLR
Sbjct: 277 DLGRIEPPPTDKRKPSASLSSRLRTYPTQSTLR 309
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 468 RPSKSINTVSQTFLGMSGVEDPPGMMASRLSQPPVTP 578
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 468 RPSKSINTVSQTFLGMSGVEDPPGMMASRLSQPPVTP 578
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical
protein W02A11.3 protein.
Length = 489
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = -1
Query: 204 EPRGRCRDSYVTSGPSSSDACRSTRPHTDRAKPSACTSSAIRAERQRXTLRGSKEPLXRE 25
EP + S +S PS+S + S RP R+ A RA RQR T S+
Sbjct: 152 EPHSQIITSNSSSLPSTSASSSSDRPRAMRSNQE--MRQARRARRQRQTQHESQRMQLEH 209
Query: 24 RCSEI 10
R +I
Sbjct: 210 RLQQI 214
>U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical
protein R01H2.5 protein.
Length = 315
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 239 LFRNFPQHVDFFR*SITIDESVYNLVHPGDTFAARSALA 355
LF N ++ FFR ++ I+++V L H D S L+
Sbjct: 70 LFHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLS 108
>AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
protein.
Length = 315
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 239 LFRNFPQHVDFFR*SITIDESVYNLVHPGDTFAARSALA 355
LF N ++ FFR ++ I+++V L H D S L+
Sbjct: 70 LFHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLS 108
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +3
Query: 315 FIQETPSRQGVHWP-----QDSCL*NMMSRAMAFTMSVDLSMTMMAAVPREVCAATRPSK 479
F++ + + WP D C N++ + + + +T A + EV RP
Sbjct: 318 FVRRSSHYEPSKWPLSDKESDRCHVNIVEKVQSIRSDHESYVTQFAKINNEVAICDRPGN 377
Query: 480 SINTVSQTFLGMSGVE 527
T L +SG++
Sbjct: 378 DSENREITSLALSGIQ 393
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +3
Query: 315 FIQETPSRQGVHWP-----QDSCL*NMMSRAMAFTMSVDLSMTMMAAVPREVCAATRPSK 479
F++ + + WP D C N++ + + + +T A + EV RP
Sbjct: 318 FVRRSSHYEPSKWPLSDKESDRCHVNIVEKVQSIRSDHESYVTQFAKINNEVAICDRPGN 377
Query: 480 SINTVSQTFLGMSGVE 527
T L +SG++
Sbjct: 378 DSENREITSLALSGIQ 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,039
Number of Sequences: 27780
Number of extensions: 395435
Number of successful extensions: 1465
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -