Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E06
         (435 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050451-1|AAH50451.2|  482|Homo sapiens zinc finger (CCCH type)...    30   3.0  
AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.         29   6.9  
AK125241-1|BAC86096.1|  569|Homo sapiens protein ( Homo sapiens ...    29   6.9  

>BC050451-1|AAH50451.2|  482|Homo sapiens zinc finger (CCCH type),
           RNA-binding motif and serine/arginine rich 2 protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = +2

Query: 194 KSRERRNSVSYDSWTRMYIYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGH 373
           KSRER NS S     R     R    GS S    RSC S   +  S   S++RG    G+
Sbjct: 413 KSRERHNSRSRGR-NRDRSRDRSRGRGSRSRSRSRSCRSRRSRSQSSSRSRSRGRRRSGN 471

Query: 374 QSR 382
           + R
Sbjct: 472 RDR 474


>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
          Length = 1943

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 4   ERQPRELRSRGIQQRAQR*RPHEIDVTRRRGRCAELE-SLQQLKNVSSTSVHER 162
           E++ R+LR+   QQR QR  P E +  +RR +  E E  LQ L+        ER
Sbjct: 792 EQRERQLRAEERQQREQRFLPEEEEKEQRRRQRREREKELQFLEEEEQLQRRER 845


>AK125241-1|BAC86096.1|  569|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43251 fis, clone HEART2006131, weakly  similar
           to Mus musculus 2-hydroxyphytanoyl-CoA lyase
           (Hpcl-pending). ).
          Length = 569

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 268 SHQSRVDVHSSPAVVTHAISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPV 107
           S   + +VH + A++ HA SPL  +  GA Y         L++K     + TP+
Sbjct: 191 SMADQTNVHQAVALLKHAKSPLIVIGKGAAYARAENEIRALVEKTQAPFLPTPM 244


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,540,499
Number of Sequences: 237096
Number of extensions: 1003154
Number of successful extensions: 2538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2537
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)