Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_E06
(435 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone... 30 0.83
AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear recep... 30 0.83
AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear recep... 30 0.83
U64854-3|AAB18315.2| 304|Caenorhabditis elegans Hypothetical pr... 28 2.5
U55365-6|AAN84868.1| 338|Caenorhabditis elegans Nuclear hormone... 27 4.4
AY204182-1|AAO39186.1| 338|Caenorhabditis elegans nuclear recep... 27 4.4
AF273838-1|AAG15185.1| 273|Caenorhabditis elegans nuclear recep... 27 4.4
AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical... 27 5.9
U64840-3|AAB04961.2| 317|Caenorhabditis elegans Serpentine rece... 27 7.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 7.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 7.8
>U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 107 protein.
Length = 357
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 212 FSSLCSLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 93
F+ LC +D+ ++ +FY W+++E T + +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208
>AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 212 FSSLCSLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 93
F+ LC +D+ ++ +FY W+++E T + +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208
>AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 212 FSSLCSLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 93
F+ LC +D+ ++ +FY W+++E T + +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208
>U64854-3|AAB18315.2| 304|Caenorhabditis elegans Hypothetical
protein K11C4.2 protein.
Length = 304
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 173 CSFYLSWTLVEETFFSCCSDSSSAHRPRRRVTSIS 69
C ++W L++ C SD H PR V I+
Sbjct: 244 CIDMVAWNLLDAAHIDCSSDEGHVHLPRNIVAVIA 278
>U55365-6|AAN84868.1| 338|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 94, isoform a protein.
Length = 338
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 203 LCSLDRCNIWCSFYLSWTLVEETFFS 126
L LD+ N++ +FY WT E F+
Sbjct: 152 LNDLDKLNLFSNFYPKWTFFESAIFA 177
>AY204182-1|AAO39186.1| 338|Caenorhabditis elegans nuclear receptor
NHR-94 protein.
Length = 338
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 203 LCSLDRCNIWCSFYLSWTLVEETFFS 126
L LD+ N++ +FY WT E F+
Sbjct: 152 LNDLDKLNLFSNFYPKWTFFESAIFA 177
>AF273838-1|AAG15185.1| 273|Caenorhabditis elegans nuclear receptor
NHR-94 protein.
Length = 273
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 203 LCSLDRCNIWCSFYLSWTLVEETFFS 126
L LD+ N++ +FY WT E F+
Sbjct: 87 LNDLDKLNLFSNFYPKWTFFESAIFA 112
>AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical
protein Y46G5A.20 protein.
Length = 109
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 134 FFSCCSDSSSAHRPRRRVTSIS 69
+F C DS H PRRR +S S
Sbjct: 22 YFKLCQDSFPRHAPRRRSSSSS 43
>U64840-3|AAB04961.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 67 protein.
Length = 317
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 176 WCSFYLSWTLVEETFFSCCSDSSSAHR 96
WC YL+W + F S C S SAHR
Sbjct: 100 WCK-YLTWWFLHIQFLSAC--SLSAHR 123
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 217 AISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLH----TAPAAVSHQSRVDVISE 50
A++ L T ATY + H K+R A + P L + +VD I
Sbjct: 5352 AVNELGQAETQATYQVEILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSCKVDAIPR 5411
Query: 49 PAVVSHEIATPLAA 8
+VV ++ PL A
Sbjct: 5412 ASVVWYKDGLPLRA 5425
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 217 AISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLH----TAPAAVSHQSRVDVISE 50
A++ L T ATY + H K+R A + P L + +VD I
Sbjct: 4712 AVNELGQAETQATYQVEILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSCKVDAIPR 4771
Query: 49 PAVVSHEIATPLAA 8
+VV ++ PL A
Sbjct: 4772 ASVVWYKDGLPLRA 4785
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 217 AISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLH----TAPAAVSHQSRVDVISE 50
A++ L T ATY + H K+R A + P L + +VD I
Sbjct: 5352 AVNELGQAETQATYQVEILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSCKVDAIPR 5411
Query: 49 PAVVSHEIATPLAA 8
+VV ++ PL A
Sbjct: 5412 ASVVWYKDGLPLRA 5425
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 217 AISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLH----TAPAAVSHQSRVDVISE 50
A++ L T ATY + H K+R A + P L + +VD I
Sbjct: 5352 AVNELGQAETQATYQVEILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSCKVDAIPR 5411
Query: 49 PAVVSHEIATPLAA 8
+VV ++ PL A
Sbjct: 5412 ASVVWYKDGLPLRA 5425
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 217 AISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLH----TAPAAVSHQSRVDVISE 50
A++ L T ATY + H K+R A + P L + +VD I
Sbjct: 4712 AVNELGQAETQATYQVEILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSCKVDAIPR 4771
Query: 49 PAVVSHEIATPLAA 8
+VV ++ PL A
Sbjct: 4772 ASVVWYKDGLPLRA 4785
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 217 AISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLH----TAPAAVSHQSRVDVISE 50
A++ L T ATY + H K+R A + P L + +VD I
Sbjct: 5352 AVNELGQAETQATYQVEILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSCKVDAIPR 5411
Query: 49 PAVVSHEIATPLAA 8
+VV ++ PL A
Sbjct: 5412 ASVVWYKDGLPLRA 5425
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,664,714
Number of Sequences: 27780
Number of extensions: 154435
Number of successful extensions: 482
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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