Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E06
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   4.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 272 GSWSHCDYRSCYSMS 316
           G W H D R CY ++
Sbjct: 491 GKWPHEDKRGCYQLA 505


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 272 GSWSHCDYRSCYSMS 316
           G W H D R CY ++
Sbjct: 581 GKWPHEDKRGCYQLA 595


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 254 TRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNR 352
           TR    G+   CD  S +     GGS+G+  ++
Sbjct: 243 TRTAETGTIRKCDESSPHDQVIIGGSNGLDTSK 275


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 320 KGGSHGVSQNRGNHSMGHQSR 382
           KGGS G   NRG     ++++
Sbjct: 88  KGGSRGRGGNRGRTGFNNKNK 108


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 82   TRRRGRCAELESLQQLKNVSSTSVHER*NEHHMLHRS 192
            T++R   ++ ES +    +S+   H   N+H  +HR+
Sbjct: 1656 TQQRNVISDSESGRLDTEMSTWGYHHNVNKHCTIHRT 1692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,078
Number of Sequences: 438
Number of extensions: 1784
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)