Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E05
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.40 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.40 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.40 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 134 VWIKLFTCDNYFSSLHCKQSTINTKTNIQSWMKTSGSLSS*HMSRLNKMPILY 292
           V I+  T D   +     +S +N   +IQS  K   ++      RLN  P  Y
Sbjct: 448 VSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTY 500


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 134 VWIKLFTCDNYFSSLHCKQSTINTKTNIQSWMKTSGSLSS*HMSRLNKMPILY 292
           V I+  T D   +     +S +N   +IQS  K   ++      RLN  P  Y
Sbjct: 448 VSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTY 500


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 134 VWIKLFTCDNYFSSLHCKQSTINTKTNIQSWMKTSGSLSS*HMSRLNKMPILY 292
           V I+  T D   +     +S +N   +IQS  K   ++      RLN  P  Y
Sbjct: 74  VSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTY 126


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 50  LWYNI--VIFFIDGLVIAPFVHPLDPSV 127
           L+Y +  ++  I G+V+   +HP DP +
Sbjct: 140 LYYTVTTILAAIVGIVMVLIIHPGDPRI 167


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 305 VLWFYFTISILRTTSGFF 358
           V+W + T   LRT S  F
Sbjct: 78  VIWIFSTSKSLRTPSNMF 95


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 106 YKGRYDQTIYKKYYNVI 56
           Y   Y+    K YYN+I
Sbjct: 343 YNNNYNNNCKKLYYNII 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 305 VLWFYFTISILRTTSGFF 358
           V+W + T   LRT S  F
Sbjct: 78  VIWIFSTSKSLRTPSNMF 95


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 150 SHVTTTFPASIANKVPLTPKPTFNPG 227
           S+V + + +      P TP P   PG
Sbjct: 378 SYVNSMYASGAQFATPCTPSPPRGPG 403


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 279 ILFKRDIC*LLKEPLV 232
           +L KR+IC  +KE LV
Sbjct: 303 LLGKRNICIAIKEKLV 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,633
Number of Sequences: 438
Number of extensions: 3280
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)