Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E04
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    29   3.1  
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    28   7.1  

>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 291 CCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKSLLDYY 458
           CC      +  +L+++  +Y  L  +   QCK        F  +C   A  LLD +
Sbjct: 87  CCDFCGEPLRFVLQVVFHLYDKLQVYAPIQCKETAYHRTLFVFMCPSMACLLLDQH 142


>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -2

Query: 473 YSRHRIIIKKRFGLLLTQQPEPIH*NKY*FALKITKMV*ILIHFNNYFQNLRHTGFI*HT 294
           Y  ++ I  KR    +T +P P H      A+ +T  V +    + +F+    + ++ HT
Sbjct: 151 YYEYKYISGKRLEYFMTSKPLPQHFTVLVRAIPVTNGVSVSDAVDKFFKEYHSSTYLSHT 210

Query: 293 TEHK 282
             H+
Sbjct: 211 VVHQ 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,397
Number of Sequences: 37544
Number of extensions: 272499
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)