Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D24
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   4.9  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 332 EIIWTYLNINNLMQISKRKAFEKINVVCPAEFILHSVIFIYIGFTKWL 475
           E+ W +L +     +   K    +  +C ++   HS+ F YI  +K L
Sbjct: 73  ELAWCFLTLATWSFMKLLKTLRIVIYICTSDHWTHSLRFYYIELSKIL 120


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 596 ELDFLLFLMTNLFYFMFXQL*NPHLYLATYT 504
           +L FL++L+    Y  F +L N H+++  Y+
Sbjct: 369 DLQFLIWLLPVGVYLCFKELRNEHVFIIIYS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,040
Number of Sequences: 5004
Number of extensions: 39246
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)