Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D23
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    31   0.11 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    26   4.1  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 182 PSV*TGMVRLPTTQTPGHNADYCPTST*HLVH*RASAIALTGILSAFKSTSADGFGEHGI 361
           P+V  G  RL  T TP HN +       H V  ++   A+  + S F     DG+ + GI
Sbjct: 491 PTVSVGTERLRITPTPAHNTE-------HYV--QSLTNAMNDVWSKFNINRIDGWEKRGI 541

Query: 362 D-ERIYAFLVIPNRYRH 409
           D  R+  F V+P    H
Sbjct: 542 DVGRLCKFPVLPFTTTH 558


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 528 HTFGQFVYRLQIWILLMKSLQSLDGELSGTVVL 430
           H F  +V  L IWI L+ S   + G L+G  VL
Sbjct: 178 HLFALWVINLYIWIKLIDSKDFVLGFLAGLSVL 210


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 622 VVEKIQHPNFELSSYHNDIAIL 557
           V  K+QHP+FE S++   + ++
Sbjct: 61  VFSKLQHPSFERSAFFTSVGLI 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,096
Number of Sequences: 5004
Number of extensions: 55140
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)