Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_D23
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 36 0.028
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 32 0.45
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 0.60
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 29 2.4
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 4.2
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 29 4.2
04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912 29 4.2
01_06_0835 - 32312264-32312884,32313529-32313642,32313739-323140... 29 4.2
12_01_0541 + 4251931-4254141 28 5.6
04_04_0517 + 25841292-25842099,25842256-25842308 28 5.6
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 28 7.4
02_05_1135 + 34367222-34367621,34367756-34367861,34367979-34368021 28 7.4
10_01_0104 + 1271635-1271878,1272542-1273134 27 9.7
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 27 9.7
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 401 YRHFHEHVAVRTTVPLSSPSNDCSDFISKI--QICRR*TNWPNVCIKHSWPVELQNGDVV 574
YRH HE V VP S + F +I +I R + P SWP+ LQ DVV
Sbjct: 132 YRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVV 191
Query: 575 MIAR 586
IA+
Sbjct: 192 AIAK 195
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 332 SADGFGEHGIDERIYAFLVIPNRYRHFHEHV---AVRTTVPLSSPSNDCS 472
S DG G +G+D+ +F V +R RH E + + + L SN CS
Sbjct: 270 STDGVGSNGVDKNHCSFSVPEDRLRHRDERMHSFQINNNIDLIIESNSCS 319
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.5 bits (68), Expect = 0.60
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 401 YRHFHEHVAVRTTVPLSSPSNDCSDFISKI--QICRR*TNWPNVCIKHSWPVELQNGDVV 574
YR HE AV VP + + + F +I +I P +WPV LQN D+V
Sbjct: 586 YRQHHEVTAVGENVPPPFMTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIV 645
Query: 575 MIAR 586
IA+
Sbjct: 646 AIAK 649
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 392 PNRYRHFHEHVAVRTTVPLSSPSNDCSDFISKI--QICRR*TNWPNVCIKHSWPVELQNG 565
P YR HE V P + + F +I ++ + + P SWP+ L+N
Sbjct: 159 PEAYRAKHEITIVGNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNR 218
Query: 566 DVVMIAR 586
D+V +A+
Sbjct: 219 DIVAVAK 225
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 461 WMGNSVVRWSSQQRAHGSVGTC 396
W G S WSS R+H S G C
Sbjct: 68 WQGGSTDHWSSVSRSHCSNGCC 89
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 340 VCAGGLEGGKDACQG-DSGGPLMYQMSSGRWAVVGVVSWGLRCGEPNHPGL 191
VCA G D C G + ++ +SGR A V WGL CGE GL
Sbjct: 71 VCAAGDGRCGDRCAGAGAAAGTGWEWASGR-ASSTVSEWGLVCGERYKVGL 120
>04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912
Length = 103
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -3
Query: 343 TVCAGGLEGGKDACQGDSGGPLMYQMSSGRWAVVGVVSWGLRCGEPNHPGLYARVDKYLD 164
+V AGG++ G D C G GG + GRW +G + E G R ++++
Sbjct: 17 SVGAGGVQVG-DVCAGSLGGHATAGVWPGRWREIGGRACAWTAAEGLENGGQERAEQFVH 75
Query: 163 W 161
+
Sbjct: 76 Y 76
>01_06_0835 -
32312264-32312884,32313529-32313642,32313739-32314029,
32314135-32314443,32315194-32315931
Length = 690
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 301 QGDSGGPLMYQMSSGRWAVVGVVSWGLRCGEPNHPGLYARVD--KYLDWILL 152
+G SG P++ +M S WA+ V + G P G R + + W+LL
Sbjct: 10 RGGSGTPVVVKMESPEWAISEVEAGAAAPGSPAAGGKAGRGKNARQITWVLL 61
>12_01_0541 + 4251931-4254141
Length = 736
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 621 WWRRSSILTS----SCRAIITTSPF*SSTGQLCLIHT 523
WW+ IL +CRA +T S + +S GQ L+H+
Sbjct: 421 WWQGHPILEKFLWLTCRATLTRSYWSNSVGQYSLLHS 457
>04_04_0517 + 25841292-25842099,25842256-25842308
Length = 286
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 547 CGASEWRCRYDSSTARS*DAGSSPP 621
CGA W C S ARS A PP
Sbjct: 198 CGARGWSCTCSSPAARSRSAARRPP 222
>12_02_0947 +
24680119-24681497,24682213-24682275,24683380-24684239,
24684399-24684772,24685932-24686112,24686201-24686220
Length = 958
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 352 FTETVCAGGLEGGKDACQG-DSGGPLMYQMSSGRWAVVGVVSWGLRCG 212
F E GG +GG + C+G D GGP Y SS R G L CG
Sbjct: 558 FGERSGCGGDDGGGN-CRGRDVGGPKGYNSSSPRGGGGGGFGERLGCG 604
>02_05_1135 + 34367222-34367621,34367756-34367861,34367979-34368021
Length = 182
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 298 GDSGGPLM-YQMSSGRWAVVGVVSW 227
GD+ GP++ Y+ G W +VG V W
Sbjct: 144 GDAAGPVVTYEDGDGDWMLVGDVPW 168
>10_01_0104 + 1271635-1271878,1272542-1273134
Length = 278
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -3
Query: 331 GGLEGGKDACQGDSGGPLMYQMSSGRWAVVGVVSWG-LRCGEPNHPGLYARVDKY 170
G G A + +GG S RW V V WG L P G+ D++
Sbjct: 149 GDAHGWTQAPRHSTGGSTWQNASESRWQVPHDVHWGNLNAHSPRSSGMPPSPDRW 203
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 544 ACGASEWRCRYDSSTA 591
AC AS RCRYD+ST+
Sbjct: 216 ACTASGGRCRYDASTS 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,197,811
Number of Sequences: 37544
Number of extensions: 407380
Number of successful extensions: 1030
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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