Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D22
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   1.6  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.3  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   8.4  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   8.4  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 196 EIHTHKKYIIILNLALVGSTLYIHIIVS 279
           E+H+H  Y++ LN A++G + Y  + V+
Sbjct: 559 ELHSHGTYLVYLNGAILGISRYPSLFVA 586


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = +2

Query: 17  FLKSSMQNL----NVHTVKRLLXSTLMSSINVWXQLPIGNLPYINLLYVVCLSFIG---- 172
           + +S ++NL    N HT   LL    +S++ VW  L   +   ++LL+ +  +  G    
Sbjct: 293 YTQSDVKNLHFGKNKHTKPHLLVMDALSNLYVWKILQKRSEISVSLLFTIRRANYGICDW 352

Query: 173 TPNPTNNMKFIHIKNIL 223
            PN +N    I +KN L
Sbjct: 353 IPNSSNMFSMI-VKNSL 368


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 36  KISTCTQSNVSXFQLSCLQSMSGXNYR*EIFHTLT 140
           ++    +SN+  FQLSCL  +S  +     F +LT
Sbjct: 387 QLQKALKSNLGLFQLSCLYPLSLNHLIQSFFQSLT 421


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 107 QLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 202
           +LP   +P ++ L  +C       NP+ N +F
Sbjct: 823 KLPRNQIPELDYLTQICFELFERTNPSGNKEF 854


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,929
Number of Sequences: 5004
Number of extensions: 46685
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)