Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D21
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   2.2  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   3.9  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   9.0  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 251 HSQVCMICNDRYILSLNHCE 192
           HS V    N+R+ILSL +CE
Sbjct: 177 HSDVTARFNERFILSLGNCE 196


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +3

Query: 201 VERQNVSVVTYHTYLRMKQYVLYNDIIRYRNIFDNNGTPLLIW 329
           +E+  ++V T   +   ++Y+LY  I+  + +  +NGT + I+
Sbjct: 316 IEKHGLTVGTTAIFDESEKYLLYGSIVGIKVVSIDNGTVVRIY 358


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 160 FSQKKYLEHIIISF 119
           F+QKKY+EH  I F
Sbjct: 819 FAQKKYVEHAFIDF 832


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 294 IFDNNGTPLLIW 329
           IFD+NG PLL W
Sbjct: 169 IFDSNGRPLLNW 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,747
Number of Sequences: 5004
Number of extensions: 45244
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)