Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D21
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0802 + 20680685-20681059,20681218-20681353,20682047-206821...    29   3.0  
03_01_0233 + 1833473-1833814,1833910-1834045,1834820-1834953,183...    29   3.0  
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512...    27   9.1  

>10_08_0802 +
           20680685-20681059,20681218-20681353,20682047-20682180,
           20682722-20682827,20683227-20683312,20683648-20683836,
           20684349-20684522,20684638-20684751,20684887-20685141
          Length = 522

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 240 YLRMKQYVLYNDIIRYRNIFDNNGTPLL 323
           Y   ++  LY+D+  YR +FD NG P L
Sbjct: 194 YCSNEERPLYHDLNAYRVLFDENGDPRL 221


>03_01_0233 +
           1833473-1833814,1833910-1834045,1834820-1834953,
           1835379-1835484,1836339-1836424,1836816-1837004,
           1837131-1837322,1837407-1837520,1837614-1837910
          Length = 531

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 240 YLRMKQYVLYNDIIRYRNIFDNNGTPLL 323
           Y    +  LY+D+  YR +FD NG P L
Sbjct: 183 YCSSNERPLYHDLNAYRVLFDENGDPRL 210


>03_06_0514 +
           34450178-34450244,34450821-34451047,34451140-34451275,
           34451818-34451951,34452037-34452142,34452602-34452687,
           34453204-34453365,34453918-34454034,34454222-34454464
          Length = 425

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 240 YLRMKQYVLYNDIIRYRNIFDNNGTPLL 323
           Y   K   LY+D+  YR +FD +G P L
Sbjct: 167 YCSSKGRALYHDLHAYRVLFDVDGNPRL 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,776,211
Number of Sequences: 37544
Number of extensions: 237040
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)