Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D20
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 292  RPADDHLKENLQVALSTCSTNCSPSLLCWWPWLSP 188
            + +DD  KE   V  +  +TN  P      P L P
Sbjct: 1094 KQSDDKTKETSTVTAAAAATNIRPGTADNKPQLKP 1128


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/34 (20%), Positives = 16/34 (47%)
 Frame = -3

Query: 297 EFGRPMIT*RKTCKLRFQHVLQIVHPLCSVGGRG 196
           ++  PM+   K+ ++  + + Q+   L    G G
Sbjct: 482 DYSLPMVNHSKSSRINIERMKQVYQQLNKYRGNG 515


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 264 TCKLRFQHVLQIVH 223
           TC L+F H   IVH
Sbjct: 165 TCALQFCHNAGIVH 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,661
Number of Sequences: 438
Number of extensions: 702
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)