Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D10
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    38   0.001
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   4.3  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   4.3  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.5  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   9.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   9.9  

>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -3

Query: 671 TKKGESXIVPTLKVGAGVVTTRAHVHYVVTEQGIAYLFGKTLRQRAYELI-KIAHPDHRE 495
           +KK  + I   + +   V  T   +  +VTEQG+A L G +  +RA E+I K AHPD++ 
Sbjct: 416 SKKDPTGITCIVPMATHVDQTEHDLDILVTEQGLADLRGLSPTERAREVIDKCAHPDYKP 475

Query: 494 ALEK 483
            L +
Sbjct: 476 LLRE 479


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 412  TCFKTKLLKLVLANVMVDFDNLKCSVEMNR 323
            T F  K  +  + N++ DF N K S ++NR
Sbjct: 1172 TLFPDKHFRGNIENILTDFSNWKLSAKLNR 1201


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 607 GLTCITWSPN 578
           GLTC+TWSP+
Sbjct: 366 GLTCVTWSPD 375


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 617 VTTRAHVHYVVTEQGIAYLFGKTLRQRAYELIKIAH 510
           VTTR+  H+      I Y FGK    +  EL+ I +
Sbjct: 131 VTTRSISHFRAILDSIRYPFGKDHASKNMELLPITY 166


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 548 LRQRAYELIKIAHPDHREALEKAAFE 471
           +++  Y L ++ HPD   A +KAA E
Sbjct: 24  IKESYYRLSRLFHPDRHTADQKAAAE 49


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 81  LSIQIFRLLHNQIKXLCHVXVFFFFNKIILKLHYLTINIGYFNKACRLAFH*HLP--QYV 254
           +++Q  R   N+ K L  V  +  F  II+      +NI YFN +  +     +P  +Y+
Sbjct: 20  ITLQYPRWTFNKWKALLPVSAYISFYFIIISSFSTHLNILYFNLSKSMVSFAQVPLEEYL 79

Query: 255 NI 260
           N+
Sbjct: 80  NL 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,692
Number of Sequences: 5004
Number of extensions: 44112
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)