Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_D09
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 81 1e-15
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 70 3e-12
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 56 6e-08
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 52 6e-07
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 50 3e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 46 5e-05
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 43 5e-04
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 41 0.001
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 41 0.001
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 41 0.002
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 40 0.002
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 40 0.003
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 40 0.003
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 40 0.004
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 39 0.007
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 39 0.007
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 39 0.007
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 39 0.007
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 34 0.21
BT016070-1|AAV36955.1| 940|Drosophila melanogaster LP07754p pro... 33 0.48
AE014297-3032|AAN13881.1| 940|Drosophila melanogaster CG31198-P... 33 0.48
BT025117-1|ABE73288.1| 248|Drosophila melanogaster IP09676p pro... 30 2.6
AE014297-2057|AAN13669.2| 280|Drosophila melanogaster CG31296-P... 30 2.6
AY069459-1|AAL39604.1| 146|Drosophila melanogaster LD18706p pro... 29 6.0
AL031027-3|CAA19840.1| 256|Drosophila melanogaster EG:80H7.2 pr... 29 6.0
AE014298-216|AAG22385.2| 256|Drosophila melanogaster CG14779-PC... 29 6.0
AE014298-215|AAF45632.1| 256|Drosophila melanogaster CG14779-PA... 29 6.0
AY094836-1|AAM11189.1| 257|Drosophila melanogaster LD44221p pro... 29 7.9
AE014297-310|AAF51985.3| 257|Drosophila melanogaster CG31549-PA... 29 7.9
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 81.4 bits (192), Expect = 1e-15
Identities = 48/186 (25%), Positives = 94/186 (50%)
Frame = +3
Query: 105 VSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRELFDIF 284
++++ Y PP+ S S + +I+ L ++ GD N+ + +G +N+RG+++ +
Sbjct: 101 INIVNAYIPPSQI-FSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVI 159
Query: 285 DDADLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNII 464
+ L +LN G PT +S N + ID++ +SP IA +C W + D+ GS H P ++I
Sbjct: 160 LENSLIVLNDGSPTHLSTH-NTFTHIDISLISPQIAHMCSWSISDNLHGSDHFPITIHIN 218
Query: 465 TSTQKYTVQESIHKYLYNKTNWNMYKDKSKDIFDNFSPSTVDPLVQYDEFSKLLLSLKEN 644
T T+ + KY ++ NW + + + ++ ++ Q + +K++ S
Sbjct: 219 TPTRPDNTL-PLPKYKTDQANWKRFNESCEKSAAYWTVGCLNQ--QVAQMTKVIRSAANY 275
Query: 645 CIPLLK 662
IP K
Sbjct: 276 SIPQTK 281
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 69.7 bits (163), Expect = 3e-12
Identities = 46/160 (28%), Positives = 73/160 (45%)
Frame = +3
Query: 60 NIQFIAISIITVCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFG 239
+I+ IAI+I + +++ Y P + I+ TL P L++GDFN + +G
Sbjct: 83 DIEAIAINIESKL-KLNIFSTYISPTKN-ITNQTLHNTFNIQQTPSLITGDFNGWHHPWG 140
Query: 240 CDTSNSRGRELFDIFDDADLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGD 419
T+N RG+ D+ L +LN PT S N + ID+T SP +AP +W + +
Sbjct: 141 SPTTNKRGKITHRFIDNMHLILLNDKSPTHFS-THNTYTHIDLTLCSPILAPHAKWKILN 199
Query: 420 DSLGSYHLPTFVNIITSTQKYTVQESIHKYLYNKTNWNMY 539
D GS H P + +T K + NW +
Sbjct: 200 DLHGSDHFPIITTLFPTTNPQKFYRPFFK--LKEANWEQF 237
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 55.6 bits (128), Expect = 6e-08
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +3
Query: 123 YCPPNNSSISLST-LRKIILQLP--KPCLVSGDFNAHNIAFGCDTSNSRGRELFDIFDDA 293
Y PP++S L K++ +P ++ GD NA +G SN+RGR + D +
Sbjct: 93 YAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLL 152
Query: 294 DLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDD-SLGSYHLPTF 452
DL +LN G T + S IDVT VS + W V +D +L ++L TF
Sbjct: 153 DLVLLNDGFKPTFNN-DRGTSFIDVTFVSRVLVAGSNWMVHEDITLSDHNLITF 205
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 52.4 bits (120), Expect = 6e-07
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Frame = +3
Query: 57 QNIQFIAISIITVCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAF 236
++IQ ++ + T G + +YC P+ + I II + LV GD+NA + +
Sbjct: 88 RHIQLSSVKVATGLGDLQFSAIYCSPS-TRIEERHFTDIIRACGQRYLVGGDWNARHWLW 146
Query: 237 GCDTSNS-RGRELFDIFDDADLCILNTGDPTTISR-PGNNASAIDVTCVSPDIAPLCEWY 410
G DT NS RGREL + IL TG PT P + S ID V I
Sbjct: 147 G-DTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDF-AVYHGIPDHLATI 204
Query: 411 VGDDSLGSYHLPTFVNIITST 473
L S HLP ++I T +
Sbjct: 205 TQSWDLDSDHLPLIISIETDS 225
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 50.0 bits (114), Expect = 3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Frame = +3
Query: 63 IQFIAISIITVCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGC 242
+Q I T GP+S VYCPP + + + I+ + +V+GD+NA + +G
Sbjct: 89 VQLAPAVIETALGPISFGAVYCPPR-FAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGA 147
Query: 243 DTSNSRGRELFDIFDDADLCILNTGDPT 326
SN RG L ++ ++++ L TG PT
Sbjct: 148 GRSNQRGIALANLVLNSEVDSLATGGPT 175
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 46.0 bits (104), Expect = 5e-05
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +3
Query: 66 QFIAISIITVCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCD 245
Q + + T G V+V VY PP I + + + L + GD+NA + +G
Sbjct: 91 QIARVHLQTSVGTVTVAAVYLPPAERWI-VDDFKSMFAALGNKFIAGGDYNAKHAWWGNP 149
Query: 246 TSNSRGRELFDIFDDADLCILNTGDPTTIS-RPGNNASAID--VTC 374
S RG+ L ++ +L TG+PT S P SA+D +TC
Sbjct: 150 RSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFITC 195
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 42.7 bits (96), Expect = 5e-04
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = +3
Query: 66 QFIAISIITVCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCD 245
Q + + T G V+V VY PP I + + + L + GD+NA + +G
Sbjct: 91 QIARVHLQTSVGTVTVAAVYLPPAERWI-VDDFKSMFAALGNKFIAGGDYNAKHAWWGNP 149
Query: 246 TSNSRGRELFDIFDDADLCILNTGDPTTIS 335
S RG+ L ++ +L TG+PT S
Sbjct: 150 RSCPRGKMLQEVIAHGQYQVLATGEPTFYS 179
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 41.1 bits (92), Expect = 0.001
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Frame = +3
Query: 105 VSVLCVYCPPNNS------SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGR 266
+ + VYCPP+ S + L+ K + K ++ GD+NA + +GC + RG
Sbjct: 75 IVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGT 133
Query: 267 ELFD-IFDDADLCILNTGDPTTISR-PGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYH 440
L++ + D I+ TG T N SAID + + + L + L S H
Sbjct: 134 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFS-ICKGLGRLEKRISSSADLSSDH 192
Query: 441 LPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYK 542
LP + I T +Q+ + L TN ++K
Sbjct: 193 LPILLEINLDTSNLFLQKQNNNILKKTTNIELFK 226
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 41.1 bits (92), Expect = 0.001
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Frame = +3
Query: 105 VSVLCVYCPPNNS------SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGR 266
+ + VYCPP+ S + L+ K + K ++ GD+NA + +GC + RG
Sbjct: 113 IVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGT 171
Query: 267 ELFD-IFDDADLCILNTGDPTTISR-PGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYH 440
L++ + D I+ TG T N SAID + + + L + L S H
Sbjct: 172 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFS-ICKGLGRLEKRISSSADLSSDH 230
Query: 441 LPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYK 542
LP + I T +Q+ + L TN ++K
Sbjct: 231 LPILLEINLDTSNLFLQKQNNNILKKTTNIELFK 264
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 40.7 bits (91), Expect = 0.002
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Frame = +3
Query: 105 VSVLCVYCPPNNS------SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGR 266
+ + VYCPP+ S + L+ K + K ++ GD+NA + +GC + RG
Sbjct: 113 IVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGT 171
Query: 267 ELFD-IFDDADLCILNTGDPTTISR-PGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYH 440
L++ + D I+ TG T N SAID + + + L + L S H
Sbjct: 172 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFS-ICKGLGRLEKRISSSADLSSDH 230
Query: 441 LPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYK 542
LP + I T +Q+ + L TN ++K
Sbjct: 231 LPILLEINLDTSTLFLQKQNNNILKKTTNIELFK 264
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 40.3 bits (90), Expect = 0.002
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 7/153 (4%)
Frame = +3
Query: 105 VSVLCVYCPPN-----NSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRE 269
+ + VYCPP+ + + + L ++ GD+NA + +GC + RG
Sbjct: 113 IVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTA 172
Query: 270 LFD-IFDDADLCILNTGDPTTISR-PGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHL 443
L++ + D+ I+ TG T N SAID + + + + L S HL
Sbjct: 173 LYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFS-ICKGLGRFEKRISSGADLSSDHL 231
Query: 444 PTFVNIITSTQKYTVQESIHKYLYNKTNWNMYK 542
P + I T +Q+ + L TN ++K
Sbjct: 232 PILLEINLDTNTLFLQKQNNNILKKNTNIELFK 264
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 39.9 bits (89), Expect = 0.003
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Frame = +3
Query: 120 VYCPPNNS------SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRELFD- 278
VYCPP+ S + L+ K + K ++ GD+NA + +GC + RG L++
Sbjct: 2 VYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGTALYEA 60
Query: 279 IFDDADLCILNTGDPTTISR-PGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFV 455
+ D I+ TG T N SAID + + + L + L S HLP +
Sbjct: 61 VQADPMAEIIATGCATHFPHDTRKNPSAIDFS-ICKGLGRLEKRISSSADLSSDHLPILL 119
Query: 456 NIITSTQKYTVQESIHKYLYNKTNWNMYK 542
I T +Q+ + L TN ++K
Sbjct: 120 EINLDTSTLFLQKQNNNILKKTTNIELFK 148
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 39.9 bits (89), Expect = 0.003
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 3/163 (1%)
Frame = +3
Query: 63 IQFIAISIITVCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGC 242
+Q +I++ G ++ VYCPP IS + L + +GD+NA + +G
Sbjct: 88 LQSTSIALQLNNGSTTLAAVYCPPR-FPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGS 146
Query: 243 DTSNSRGRELFDIFDDAD--LCILNTGDPT-TISRPGNNASAIDVTCVSPDIAPLCEWYV 413
+G++L++ + L ++ G PT + P ID ++ +
Sbjct: 147 RLVTPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDF-AITKHVPRNMVTAE 205
Query: 414 GDDSLGSYHLPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYK 542
L S H P F+N++T ++ + + ++ +TNW Y+
Sbjct: 206 ALADLSSDHSPVFLNMLT---RHHIVDPPYRLTNFRTNWPRYQ 245
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 39.5 bits (88), Expect = 0.004
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Frame = +3
Query: 105 VSVLCVYCPPNNS------SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGR 266
+ + VYCPP+ S + L+ K + K ++ GD+NA + +GC + RG
Sbjct: 113 IVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGT 171
Query: 267 ELFD-IFDDADLCILNTGDPTTISR-PGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYH 440
L++ + D I+ TG T N SAID + + + L + L S H
Sbjct: 172 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFS-ICKGLGRLEKRISSVADLSSDH 230
Query: 441 LPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYK 542
LP + I T +Q+ + L TN ++K
Sbjct: 231 LPILLEINLDTSTLFLQKQNNNILKKTTNIELFK 264
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 38.7 bits (86), Expect = 0.007
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Frame = +3
Query: 63 IQFIAISIITVCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGC 242
+Q +I++ G ++ VYCPP IS + L + +GD+NA + +G
Sbjct: 88 LQSTSIALQLNNGSTTLAAVYCPPR-FPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGS 146
Query: 243 DTSNSRGRELFDIFDDAD--LCILNTGDPT-TISRPGNNASAIDVTCVSPDIAPLCEWYV 413
+ +G++L++ + L ++ G PT + P ID ++ +
Sbjct: 147 RLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDF-AITKHVPRNMVTAE 205
Query: 414 GDDSLGSYHLPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYK 542
L S H P F+N++T + + ++ +TNW Y+
Sbjct: 206 ALADLSSDHSPVFLNMLTRPH---IVDPPYRLTNFRTNWPRYQ 245
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 38.7 bits (86), Expect = 0.007
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Frame = +3
Query: 105 VSVLCVYCPPNNS------SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGR 266
+ + VYCPP+ S + L+ K + K ++ GD+NA + +GC + RG
Sbjct: 125 IVIASVYCPPSLSWSPHHFTDVLNFAEKTMGGQTK-LILCGDWNAKHRQWGCIRACQRGA 183
Query: 267 ELFD-IFDDADLCILNTGDPTTISRPGNNA-SAIDVTCVSPDIAPLCEWYVGDDSLGSYH 440
L+D I D+ I+ TG T + SAID + + + + L S H
Sbjct: 184 ALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFS-ICKRLGRYEKRISSSAHLSSDH 242
Query: 441 LPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYKD 545
LP + I + ++Q+ + L TN ++K+
Sbjct: 243 LPILLEINLDIKTISLQKQNNNILKKTTNIELFKN 277
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 38.7 bits (86), Expect = 0.007
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 144 SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRELFDIFDDADLCILNTGDP 323
S+ S L KI Q+ L+ GDFN+ + A+ C +N G+ L ++ D IL P
Sbjct: 140 SLYRSDLLKIS-QINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQP 198
Query: 324 TTISRPGN-NASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNIITSTQKYTVQESI 500
T I AS +D+ C++ L V + L S HLP + T+ + ++
Sbjct: 199 TYIPHNHKAKASTLDL-CLTNIPNQLANPAVMQE-LSSDHLPVVIKYSTNFMR-----NV 251
Query: 501 HKY-LYNKTNWNMYK 542
Y + + NW ++K
Sbjct: 252 KTYPILGRANWALFK 266
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 38.7 bits (86), Expect = 0.007
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 144 SISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRELFDIFDDADLCILNTGDP 323
S+ S L KI Q+ L+ GDFN+ + A+ C +N G+ L ++ D IL P
Sbjct: 88 SLYRSDLLKIS-QINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQP 146
Query: 324 TTISRPGN-NASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNIITSTQKYTVQESI 500
T I AS +D+ C++ L V + L S HLP + T+ + ++
Sbjct: 147 TYIPHNHKAKASTLDL-CLTNIPNQLANPAVMQE-LSSDHLPVVIKYSTNFMR-----NV 199
Query: 501 HKY-LYNKTNWNMYK 542
Y + + NW ++K
Sbjct: 200 KTYPILGRANWALFK 214
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 33.9 bits (74), Expect = 0.21
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 2/148 (1%)
Frame = +3
Query: 105 VSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRELFDIF 284
+++ VYCPP + + L L + +GD+NA + +G N +G++L+
Sbjct: 103 LTLAAVYCPPRFTVLEAQFL-DFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTI 161
Query: 285 DDA--DLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVN 458
A L ++ G PT N + V+ +I+ L S H P ++
Sbjct: 162 IKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVLIH 221
Query: 459 IITSTQKYTVQESIHKYLYNKTNWNMYK 542
+ + + +KTNW YK
Sbjct: 222 LRRYAENVKPPTRLTS---SKTNWLRYK 246
>BT016070-1|AAV36955.1| 940|Drosophila melanogaster LP07754p
protein.
Length = 940
Score = 32.7 bits (71), Expect = 0.48
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 474 QKYTVQESIHKYLYN--KTNW--NMYKDKSKDIFDNFSPSTVDPLV 599
+KY Q S+ +YL + NW + Y + SKDIF +F+ PL+
Sbjct: 467 KKYEYQSSLPEYLLGAWQANWPNSSYNESSKDIFKSFTEQVGYPLI 512
>AE014297-3032|AAN13881.1| 940|Drosophila melanogaster CG31198-PA
protein.
Length = 940
Score = 32.7 bits (71), Expect = 0.48
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 474 QKYTVQESIHKYLYN--KTNW--NMYKDKSKDIFDNFSPSTVDPLV 599
+KY Q S+ +YL + NW + Y + SKDIF +F+ PL+
Sbjct: 467 KKYEYQSSLPEYLLGAWQANWPNSSYNESSKDIFKSFTEQVGYPLI 512
>BT025117-1|ABE73288.1| 248|Drosophila melanogaster IP09676p
protein.
Length = 248
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 96 CGPVSVLCVYCPPNNSSISLSTLRKIIL 179
C S V CPPN ++S+ST R ++L
Sbjct: 6 CNNPSKFSVMCPPNARTLSMSTYRNLLL 33
>AE014297-2057|AAN13669.2| 280|Drosophila melanogaster CG31296-PA
protein.
Length = 280
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 96 CGPVSVLCVYCPPNNSSISLSTLRKIIL 179
C S V CPPN ++S+ST R ++L
Sbjct: 38 CNNPSKFSVMCPPNARTLSMSTYRNLLL 65
>AY069459-1|AAL39604.1| 146|Drosophila melanogaster LD18706p
protein.
Length = 146
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 175 FCNYPSLVLFLVILMLTI*LSVVILPIQEVVNYLIYLMMLIYVF*IQVTLLLFLDLVI 348
F +++FLV+ +L+ L+++ LP++ V+ Y L+ L Y+ +L +FL + I
Sbjct: 6 FVTMSFIIVFLVLALLS--LTIIRLPLKAVLQYEWLLVRLSYMGTAISSLFMFLAVCI 61
>AL031027-3|CAA19840.1| 256|Drosophila melanogaster EG:80H7.2
protein.
Length = 256
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 175 FCNYPSLVLFLVILMLTI*LSVVILPIQEVVNYLIYLMMLIYVF*IQVTLLLFLDLVI 348
F +++FLV+ +L+ L+++ LP++ V+ Y L+ L Y+ +L +FL + I
Sbjct: 116 FVTMSFIIVFLVLALLS--LTIIRLPLKAVLQYEWLLVRLSYMGTAISSLFMFLAVCI 171
>AE014298-216|AAG22385.2| 256|Drosophila melanogaster CG14779-PC,
isoform C protein.
Length = 256
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 175 FCNYPSLVLFLVILMLTI*LSVVILPIQEVVNYLIYLMMLIYVF*IQVTLLLFLDLVI 348
F +++FLV+ +L+ L+++ LP++ V+ Y L+ L Y+ +L +FL + I
Sbjct: 116 FVTMSFIIVFLVLALLS--LTIIRLPLKAVLQYEWLLVRLSYMGTAISSLFMFLAVCI 171
>AE014298-215|AAF45632.1| 256|Drosophila melanogaster CG14779-PA,
isoform A protein.
Length = 256
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 175 FCNYPSLVLFLVILMLTI*LSVVILPIQEVVNYLIYLMMLIYVF*IQVTLLLFLDLVI 348
F +++FLV+ +L+ L+++ LP++ V+ Y L+ L Y+ +L +FL + I
Sbjct: 116 FVTMSFIIVFLVLALLS--LTIIRLPLKAVLQYEWLLVRLSYMGTAISSLFMFLAVCI 171
>AY094836-1|AAM11189.1| 257|Drosophila melanogaster LD44221p
protein.
Length = 257
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 397 SGAMSGLTQVTSMADALLPGLEIVVGSPVFKIHKSASSNI-SNNSRPLELEVSQPK 233
+GA SG+ ++ A L GL ++VG K+ ++A + + + + PLEL+ K
Sbjct: 12 TGASSGIGASAAVHLAKLGGLLVIVGRNEEKLKETADNIVAAGGATPLELQADMTK 67
>AE014297-310|AAF51985.3| 257|Drosophila melanogaster CG31549-PA
protein.
Length = 257
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 397 SGAMSGLTQVTSMADALLPGLEIVVGSPVFKIHKSASSNI-SNNSRPLELEVSQPK 233
+GA SG+ ++ A L GL ++VG K+ ++A + + + + PLEL+ K
Sbjct: 12 TGASSGIGASAAVHLAKLGGLLVIVGRNEEKLKETADNIVAAGGATPLELQADMTK 67
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,295,355
Number of Sequences: 53049
Number of extensions: 565125
Number of successful extensions: 1723
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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