Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D09
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    67   1e-11
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    30   1.3  
U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily ass...    29   2.4  
U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily ass...    29   2.4  
AL132863-6|CAB60577.1|  141|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF016435-5|AAB65881.1|  538|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 6/184 (3%)
 Frame = +3

Query: 120 VYCPPNNSSIS---LSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTS-NSRGRELFDIFD 287
           VY PP +SS +   L T    I Q     ++SGD NAH+ A+  + S ++RGREL ++ D
Sbjct: 6   VYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELID 65

Query: 288 -DADLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNII 464
              DL I N    T       + S+ D+T  + D+A  C W      LGS H+P  + I 
Sbjct: 66  LHPDLIIQNEQVHTRADT--YSISSPDITICTADLATKCHWST-LYKLGSDHIPMKLKIN 122

Query: 465 TSTQKYTVQESIHKYLYNKTNWNMYKDKSKDIFDNFS-PSTVDPLVQYDEFSKLLLSLKE 641
            +      +  +    + K NW +++D  +   + +S P    P+ ++  F+K++L   +
Sbjct: 123 QAATPKRPKRLVAN--FKKANWQLFRDHIESRINGYSGPMDAIPMEKF--FNKVILEADK 178

Query: 642 NCIP 653
             +P
Sbjct: 179 KAVP 182


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +3

Query: 489 QESIHKYLYNKTNWNMYK----DKSKDIFDNFSPSTVDPLVQYDEFSKLLLSLKENCIPL 656
           +  IHKY+ +K N ++ K    +K  DI      +TV+P V+++  +K ++  K+  I L
Sbjct: 413 ETKIHKYILSKYNIDINKYIDINKYNDIIITHE-NTVNPTVEFNTINKEIVGSKKINILL 471

Query: 657 LKH 665
            KH
Sbjct: 472 PKH 474


>U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform a protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +3

Query: 228 IAFGCDTSNSRGRELFDIFDDA--DLCILNTGDPTT----ISRPGNNASAID 365
           I+ G DTS+  G   F+++DDA  D  ++ T D T     I R G + +A D
Sbjct: 327 ISLGYDTSSRTGASRFEVWDDAKTDAYVIETIDQTARTKWIQRLGKSETAQD 378


>U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform b protein.
          Length = 638

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +3

Query: 228 IAFGCDTSNSRGRELFDIFDDA--DLCILNTGDPTT----ISRPGNNASAID 365
           I+ G DTS+  G   F+++DDA  D  ++ T D T     I R G + +A D
Sbjct: 503 ISLGYDTSSRTGASRFEVWDDAKTDAYVIETIDQTARTKWIQRLGKSETAQD 554


>AL132863-6|CAB60577.1|  141|Caenorhabditis elegans Hypothetical
           protein Y37H2A.10 protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 309 NTGDPTTISRPG---NNASAIDVTCVSPDIAPLCEWY 410
           N GD T I  PG   NN + + +TC    + PL  +Y
Sbjct: 61  NFGDMTPIQTPGTDANNCAILTLTCQGTPVDPLNNYY 97


>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/40 (22%), Positives = 30/40 (75%)
 Frame = +1

Query: 238 VVILPIQEVVNYLIYLMMLIYVF*IQVTLLLFLDLVIMHQ 357
           +V++ IQE +++ I+ +++++++   + +L+F  ++++HQ
Sbjct: 257 IVLVYIQESISHRIFNLLVVWLYAFPIVVLMF-PVILVHQ 295


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 29/154 (18%), Positives = 60/154 (38%)
 Frame = +3

Query: 102  PVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRELFDI 281
            P   +C+ C P+ +    +     I+ L +PCL+ G+ N +   F C       + +  I
Sbjct: 1680 PTKEICIVCHPDTTIFRCTN----IVNLHEPCLICGN-NIYK--FSCSNYEHHNQYVTPI 1732

Query: 282  FDDADLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNI 461
                D   L   D     +       + +   +P +  +  +  G+ ++ ++   T    
Sbjct: 1733 ISIFDQPKLKPVDEEFKKKLAVKNETV-IYENTPAVWNVKAYRAGESAVNTFFAETDDRG 1791

Query: 462  ITSTQKYTVQESIHKYLYNKTNWNMYKDKSKDIF 563
              + Q   +    H+  +N   W M +DKS+ +F
Sbjct: 1792 FKTLQGDQLAGFFHRE-FNWVTWRMDEDKSERVF 1824


>AF016435-5|AAB65881.1|  538|Caenorhabditis elegans Hypothetical
           protein F59D6.6 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +3

Query: 366 VTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYKD 545
           +  +S +I P+ +  + + +L   +LP   NI+   ++  + +  H  ++   N NM+  
Sbjct: 420 IAAISEEI-PVIQ-IISNPNLKKANLPEVSNILARGKRIGIVQDNHPDIFKAKNCNMFVS 477

Query: 546 KSKDIFDNF 572
            SK +F  +
Sbjct: 478 ISKTMFQEY 486


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 462 ITSTQKYTVQESIHK---YLYNKTNWNMYKDKSKDIFDNFSPSTV 587
           + ST+K  V   + +   +L N   W M +D+S+    NF PSTV
Sbjct: 164 VVSTKKSDVDSVVTRLNIHLTNPAFW-MSQDRSRSFLANFKPSTV 207


>AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical
           protein Y48B6A.1 protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 438 HLPT-FVNIITSTQKYTVQESIHKYLYNKTNWNMYKDKSK-DIFDNFSPSTVDPLVQYDE 611
           H+P   V + T  + Y   E   +Y+++      +++  K D   NF PS  D L +  +
Sbjct: 230 HMPAPKVALPTHAESYNPPE---EYIFDDEERKKWEEAEKEDRVLNFMPSKYDALRKVPQ 286

Query: 612 FSKLLLSLKENCIPL 656
           + K +    E C+ L
Sbjct: 287 YDKFITERFERCLDL 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,853
Number of Sequences: 27780
Number of extensions: 310281
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)