Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D08
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.3  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   5.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   5.3  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   7.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   7.0  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    24   7.0  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       24   7.0  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    24   9.3  

>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = -2

Query: 196 WFCMGLYSSAILAVSVYSW---CRISACCHSYC 107
           W C   Y   + ++S  SW   CR S   H  C
Sbjct: 15  WICYEEYDKKLCSLSNDSWRRPCRCSLIAHESC 47


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 223 GNNYIVQYSWFCMGLYSSAILAVSVYSWC 137
           G+N  V+ SWF M  Y   + + +V  +C
Sbjct: 306 GSNEEVENSWFHMHFYPPLLRSATVKKFC 334


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 292 DFFTSIPTHIDYVGQAKAEKL 230
           D ++ +P++++Y   AKAEKL
Sbjct: 843 DTWSRLPSNLEYCSWAKAEKL 863


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 235 KLXQGNNYIVQYSWF 191
           +L Q +NYI+ YSW+
Sbjct: 71  ELGQVDNYILSYSWY 85


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 199 SWFCMGLYSSAILAVSVYSWCRISACCHSYCSSMANV 89
           S F +G Y++AI +  VYS    S+C       ++N+
Sbjct: 72  SAFLLGSYTAAISSPGVYSMMTPSSCLSLLNPLLSNI 108


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 372 LNWLLLISFFKIICCC 325
           L WL+  SF K I CC
Sbjct: 197 LGWLIRFSFRKSIICC 212


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 232 LXQGNNYIVQYSWFCMGLYSSAILAVSVYSWCRISACCHSYCS 104
           L + N Y +    F + +    +L V +  + RI  CC S CS
Sbjct: 17  LLEANKYKLSEITFKVYISIRRLLIVVITLYRRIVECCASLCS 59


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 34  CWFVITVLRNLPVQRIASVHWPWRNSKN-GSKQKSGTKNIH*LRELLNYITPYKTNY 201
           C  +I  LR L   ++  V    R +K+ G+KQ S  +++  L+ L+NY      +Y
Sbjct: 331 CPDLIMSLRFLRFLQLVKVTHDQRLTKSKGTKQISQEEDLRILQPLMNYAQELSNDY 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,704
Number of Sequences: 5004
Number of extensions: 27552
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)