Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D08
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         38   0.003
07_03_0444 - 18279368-18279890,18279995-18280326                       28   2.2  
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    27   6.6  
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541...    27   6.6  
06_03_0002 - 15280292-15281550,15282714-15282840                       26   8.7  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -3

Query: 219 IITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXLTVPPWPMYRRNPLNWQVPKNGDDK 40
           ++   ++  FV GY +  F   +            +TVP WP + R+PL W      D  
Sbjct: 16  LLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFNRHPLKWLDAAEADRH 75

Query: 39  PASQ 28
           P  Q
Sbjct: 76  PRPQ 79


>07_03_0444 - 18279368-18279890,18279995-18280326
          Length = 284

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 29  WLAGLSSP-FLGTCQFRGLRRYIGHGG 106
           W+ G S P ++G   FRGL RY G GG
Sbjct: 213 WM-GFSEPRYVGHMAFRGLARYDGDGG 238


>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +2

Query: 17  SFLSWLAG---LSSPFLGTCQFRGLRRYIG 97
           SF  W  G   L +P+L TC   G+ RY G
Sbjct: 18  SFRQWFQGSVILQTPYLKTCCIEGVGRYGG 47


>10_02_0113 +
           5410413-5410471,5411330-5413309,5413535-5413594,
           5416037-5418047
          Length = 1369

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 17  SFLSWLAGLSSPFLGTCQFRGLRRYIG 97
           SFL WLA LS+ ++ T     L  Y+G
Sbjct: 744 SFLLWLAYLSADYIATFTLGRLALYVG 770


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 181 LYSSAILAVSVYSWCRISACCHSYCSSMANVPTQSSEL 68
           L+   +L     S  R +A C SYC S+ N+P + S +
Sbjct: 157 LWRVVLLCTECLSLVRSAAVC-SYCLSLDNLPPEDSSV 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,378,270
Number of Sequences: 37544
Number of extensions: 165901
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)