Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D08
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical ...    51   3e-07
AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    28   2.6  
U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical
           protein C34B2.10 protein.
          Length = 105

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = -3

Query: 249 KQKQRNYXRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXLTVPPWP-MYRRNPL 73
           K  +R Y + I+T+  I+GF+ G+  QQ S +++           + +PPWP ++R+NP+
Sbjct: 25  KVAERTY-QVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALIILPPWPFLFRKNPI 83

Query: 72  NWQVPKNGDDKPASQERKEVK 10
            W  P   + + +  ++KE K
Sbjct: 84  VWHTP--AEPQESGDKKKETK 102


>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
          mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 60 PKNGDDKPASQERKEVK 10
          PK GDDKPAS + K +K
Sbjct: 36 PKTGDDKPASFKHKHLK 52


>U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical
           protein AH9.4 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 34  CWFVITVLRNLPVQRIASVHWPWRNSKNGSKQKSG 138
           CWF ++VLR + V         WR  +N  K  +G
Sbjct: 103 CWFFLSVLRYIAVFHPFKYRTIWRQPRNALKFLAG 137


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 2   SLXFTSFLSWLAGLSSPFLGTCQF 73
           S   T+FL W      P++ TCQF
Sbjct: 141 STFLTAFLPWSIFFGFPYVATCQF 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,339,912
Number of Sequences: 27780
Number of extensions: 153999
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)