Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D08
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 178 ITPYKTNYTEQCN 216
           +TPY  NYT+ C+
Sbjct: 443 VTPYNKNYTKFCS 455


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 283 TSIPTHIDYVGQA 245
           TS+PT+I Y+G+A
Sbjct: 652 TSMPTYICYLGKA 664


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 369 NWLLLISFFKIIC 331
           NWLLLI    I C
Sbjct: 3   NWLLLIVCLSIAC 15


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 75  LNWQVPKNGDDKP 37
           L+WQ+P N  + P
Sbjct: 301 LHWQLPHNSTNPP 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,155
Number of Sequences: 438
Number of extensions: 2195
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)