Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_D05
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 30 1.3
06_03_0788 - 24603849-24603949,24604030-24604123,24604206-246044... 30 1.8
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 29 2.3
10_06_0113 - 10903419-10903439,10904452-10904726,10905082-109052... 29 3.1
09_04_0450 - 17701404-17701733,17702777-17702826,17703370-17703376 27 9.4
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 27 9.4
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 27 9.4
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 422 IHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDT 309
+ QN +SC + T +N ++ GL G++ IWDLD+
Sbjct: 93 VGQNLVSCSS---DTTLKSNIVASGGLGGEVFIWDLDS 127
>06_03_0788 -
24603849-24603949,24604030-24604123,24604206-24604413,
24604727-24604839,24605679-24605816,24605916-24605999,
24606517-24606675,24606754-24606837,24607505-24607840,
24607941-24608042,24608970-24609153,24609699-24610044,
24610444-24610591,24611053-24611203,24611786-24611867,
24612314-24612362
Length = 792
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 560 DGDDIKYVAKLDNTQRKESGGLSAMKKFQSLDRH 459
D D+K ++ + N +RK S G +M K S D+H
Sbjct: 726 DVKDVKLISTVVNKKRKSSNGTRSMDKNNSEDKH 759
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 456 SMTIQGLELLHSRQSPGLLPLSVVEFGDV 542
S T Q LE++H PG+LP ++V DV
Sbjct: 203 SKTFQLLEMIHQSTKPGMLPNALVVANDV 231
>10_06_0113 -
10903419-10903439,10904452-10904726,10905082-10905247,
10905622-10905766,10905837-10905896,10905979-10906028
Length = 238
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = -1
Query: 632 GCSWITXNSLIVAGHSC-IPLLYCHDGDDIKYVAKLDNTQRKESGGLSAMKKFQSLDRHA 456
G W SL G C P++Y + + K+ +GG+S+M+ D H
Sbjct: 51 GFHWDHRKSLNYVGKRCGNPMIYATENSNASVPPKMTTF----AGGVSSMQAHGPTDHHI 106
Query: 455 RIETSDTFLDSIHQNAISC 399
D F S++Q + C
Sbjct: 107 HPPFKDGFGPSMNQTSFFC 125
>09_04_0450 - 17701404-17701733,17702777-17702826,17703370-17703376
Length = 128
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 285 QDCLNKNCIRYFIYLFMQLIISLKRVPKSLNKYINGESGEYIAITVSSV 139
QDC NC F YL I LK +P+ +Y GE+ Y+ + ++V
Sbjct: 2 QDC---NCCCLFDYLDA---IILKAIPREAKQYELGEARYYVVLVFNAV 44
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 456 SMTIQGLELLHSRQSPGLLP 515
S T Q LE++H + PGLLP
Sbjct: 239 SKTFQLLEMIHQSKEPGLLP 258
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -2
Query: 574 YCTATTVTILSTSPNSTTLRGRSPGD--CLL*RSSSPWIVMLVSRPAIRS--WTRYTRTL 407
+CT + + +T+ +ST++RG PG C L R + V L S I+ WT + L
Sbjct: 340 FCTKCALYLCATASSSTSIRG-VPGSIPCPLCRHTIVSFVRLTSTTPIKELPWTNKSLAL 398
Query: 406 SRASIFT 386
A T
Sbjct: 399 CAAGAST 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,063
Number of Sequences: 37544
Number of extensions: 276518
Number of successful extensions: 668
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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