Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_D04
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 72 7e-14
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 44 2e-05
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 42 9e-05
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 39 6e-04
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 38 0.001
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 37 0.002
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 35 0.011
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 33 0.024
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 30 0.23
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 8.5
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 71.7 bits (168), Expect = 7e-14
Identities = 29/44 (65%), Positives = 40/44 (90%)
Frame = -1
Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
W+PAITIKQILLGIQDLL++PN+ PAQ EAYT++ ++++EY+K
Sbjct: 103 WKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEK 146
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = -1
Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEY 472
W P + IL IQ LLN+PN PA AEA ++ +N+ EY
Sbjct: 96 WSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEY 137
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 41.5 bits (93), Expect = 9e-05
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -1
Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYD 469
W PA+TI ++LL I LL +PN DP E +Y +R Y+
Sbjct: 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYE 135
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 600 DWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQN 484
DW PA+ I+ +LL IQ L+ PN DP + I+ +N
Sbjct: 93 DWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKEN 131
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
W ++ ILL +Q LL EPN P A+A ++ ++ +EY +
Sbjct: 121 WSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 600 DWRPAITIKQILLGIQDLLNEPNVKDPAQAEA 505
DW P + + IL+G+Q L PN +DP EA
Sbjct: 112 DWNPVLNLNSILVGLQFLFLSPNAEDPLNKEA 143
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.011
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -1
Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEY 472
W P ++++ILL + +L EPN + A +A ++ ++R EY
Sbjct: 111 WSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEY 152
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
++P+I ++ +L I LL EPN DP A Y +R +DK
Sbjct: 100 FKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
W P + + IL+ + +L+ PN + PA +A + +N E+ K
Sbjct: 111 WLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKK 154
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 343 FNLLSSHLYCFLGNG 387
F+L S++ +CFLG+G
Sbjct: 149 FDLFSNYTFCFLGDG 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,554
Number of Sequences: 5004
Number of extensions: 39867
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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