Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_D04
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-3|AAK67232.1|  166|Caenorhabditis elegans Ubiquitin conju...    85   4e-17
AF106565-1|AAC97374.1|  166|Caenorhabditis elegans ubiquitin-con...    85   4e-17
U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        46   3e-05
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    46   3e-05
Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical pr...    41   8e-04
S56051-1|AAB25489.2|  147|Caenorhabditis elegans ubiquitin-conju...    41   8e-04
Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical pr...    40   0.001
AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    39   0.002
AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical...    38   0.004
Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical p...    37   0.010
AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin co...    36   0.017
U00035-7|AAA50648.2|  153|Caenorhabditis elegans Ubiquitin conju...    32   0.36 
AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine re...    31   0.48 
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    27   7.8  

>U70849-3|AAK67232.1|  166|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein9 protein.
          Length = 166

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 34/45 (75%), Positives = 42/45 (93%)
 Frame = -1

Query: 600 DWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           DW+P+I+IKQ+L+GIQDLLN PN++DPAQAEAY IYCQNR EY+K
Sbjct: 102 DWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEK 146


>AF106565-1|AAC97374.1|  166|Caenorhabditis elegans
           ubiquitin-conjugating enzyme 9homolog protein.
          Length = 166

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 34/45 (75%), Positives = 42/45 (93%)
 Frame = -1

Query: 600 DWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           DW+P+I+IKQ+L+GIQDLLN PN++DPAQAEAY IYCQNR EY+K
Sbjct: 102 DWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEK 146


>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           W P   +  IL  IQ LL+EPN   PA + A  +Y +NR EY+K
Sbjct: 96  WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 139


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           W P   +  IL  IQ LL+EPN   PA + A  +Y +NR EY+K
Sbjct: 96  WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 139


>Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical
           protein M7.1 protein.
          Length = 147

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           W PA+TI ++LL I  LL +PN  DP   E   IY  +R  Y++
Sbjct: 93  WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136


>S56051-1|AAB25489.2|  147|Caenorhabditis elegans
           ubiquitin-conjugating enzyme protein.
          Length = 147

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           W PA+TI ++LL I  LL +PN  DP   E   IY  +R  Y++
Sbjct: 93  WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136


>Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical
           protein F49E12.4 protein.
          Length = 160

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -1

Query: 600 DWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           +W+P  T++ +LL +  LLNEP++  P   +A   Y  N++E+ K
Sbjct: 106 NWKPETTMEDVLLNLIVLLNEPDLSRPVNIDAAHDYIHNKVEFVK 150


>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIY 493
           W P  +++ ILL +  LLNEPN   PA  +A  +Y
Sbjct: 115 WNPTQSVRTILLSVISLLNEPNTSSPANVDASVMY 149


>AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y87G2A.9 protein.
          Length = 170

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           W P  +I++ILL +  +L EPN + PA   A  ++ ++R +++K
Sbjct: 110 WSPVQSIEKILLSVVSMLAEPNDESPANVSAAKMWREDRAQFEK 153


>Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical
           protein F58A4.10 protein.
          Length = 164

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 466
           W P  T++ ILL +  +L +PN + PA  +A  +  +N  E+ K
Sbjct: 109 WLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKK 152


>AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein13 protein.
          Length = 151

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 597 WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLE 475
           W PA+ I+ +LL IQ LL+ PN +DP   +    +  N  E
Sbjct: 96  WSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTNEAE 136


>U00035-7|AAA50648.2|  153|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein18 protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 600 DWRPAITIKQILLGIQDLLNEPNVKDPAQAE 508
           +W+PA   +Q+++ +  L+NEP    P +A+
Sbjct: 94  NWKPATKTEQVMMALLSLINEPEPSHPIRAD 124


>AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein33 protein.
          Length = 334

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 327 SVVLLF*SPVFTFILLFRQWLSSLTLHCPILIF 425
           S ++LF S +F  + ++RQ+LS L + C ++I+
Sbjct: 110 SALILFTSRIFMIMNMYRQYLSHLRIFCELMIY 142


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 372  LFRQWLSSLTLHCPILIFTQQQPLHVP-ALLLACHTLA 482
            LF QW+S  +    +L+   +Q  H P ALL+ C  ++
Sbjct: 1697 LFSQWMSVRSAANQLLVNLSRQQFHEPVALLILCENMS 1734


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 372  LFRQWLSSLTLHCPILIFTQQQPLHVP-ALLLACHTLA 482
            LF QW+S  +    +L+   +Q  H P ALL+ C  ++
Sbjct: 1697 LFSQWMSVRSAANQLLVNLSRQQFHEPVALLILCENMS 1734


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 126 FIILWLTCIYLFVKLITEMLTSKKHQKVTTILITTEXTNMLL 1
           F+I   T I L+V   ++M+T+K++  V   LIT    N LL
Sbjct: 172 FVIKESTGIILYVLKFSKMITTKENHSVILDLITFIVLNSLL 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,847,561
Number of Sequences: 27780
Number of extensions: 217111
Number of successful extensions: 481
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)