Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_D02
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 30 0.41
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 28 1.3
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces... 27 2.9
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 3.8
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 27 3.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 5.0
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 6.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 8.8
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 25 8.8
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 8.8
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 8.8
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 8.8
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 29.9 bits (64), Expect = 0.41
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 238 DFHIIKWYIACIVKYMNFSNK*KILNHSSTY 330
DFHI I C ++ M+F N + LN S Y
Sbjct: 129 DFHIYSQLIMCFIREMSFENAEETLNASLPY 159
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 446 YFLYAVCPQGTNILFVVLXYFPGVRELKCIALAIYKGSFSYPPTIASIGNELLF 607
YF+ C G +L V + FP R L ++ +I G+ ++ ++ + N LLF
Sbjct: 162 YFIADFCYWGNILLLVYIWIFPESRRLFILSYSISYGTLAW--SVVAWRNSLLF 213
>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Frame = -2
Query: 459 AYRKYDFEILCGFNYEWVKTSDNYIPENAVV-------------GGYSEVRYEPLYIGRA 319
A+ F G ++EW K+ D +P +V G Y E RYE + +
Sbjct: 100 AFSGIAFSAAKGLDWEWCKSPDRGLPRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEK 159
Query: 318 MVKNFLLIGK 289
++KNF + K
Sbjct: 160 VLKNFQRLQK 169
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 109 KL*QVASSQTFNLLLFTYYNVVFVMEETTPYIFLN 213
KL SSQ + L T Y + F +E++ P FLN
Sbjct: 238 KLLMKLSSQNDDKSLLTAYQLAFDLEDSAPQEFLN 272
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 235 FDFHIIKWYIACIVKYMNFSNK*KILNHSSTYVKW 339
FD + WY KY+ F+ ++ + S T +KW
Sbjct: 215 FDTGDVLWYDPINFKYLRFNKNGQLNSSSVTAIKW 249
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -2
Query: 561 NEPLYIARAIHFNSLTPGKYX---RTTNKMFVPWGHTAYRKYDFEILCGFNYEWVKTSDN 391
+E L I+ + ++ PG TN+ FV W T Y++ + + VKT
Sbjct: 350 SEKLTISNVNRYLNIVPGSLDLQFSLTNENFVHWNSTVYQELLNLKSNNSSVDGVKTRRQ 409
Query: 390 YIPENAVV 367
+ ENA++
Sbjct: 410 LLEENALL 417
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 600 CYLSFLPNVVHHPQFPYHFCNVSYLGILG 686
CY++ P+ + Y F N S + ILG
Sbjct: 749 CYVNAFPSYIRLEDIAYPFANNSMIAILG 777
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 422 NPHNISKSYFLYAVCPQGTNILFVVL 499
+PHN+S FL +C N +F +L
Sbjct: 1319 HPHNLSMKEFLCPLCKALCNTIFPIL 1344
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 672 NSLHCKSDKEIEGGELRWVKMTNNSSLPMDAIVGGYENEPLYIARAI 532
N H K + G + N +S P +VG ++N+PL R+I
Sbjct: 587 NRKHISPKKAVTGQSWFDHQYENLASSPHPLLVGVFQNQPLEYIRSI 633
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 277 KYMNFSNK*KILNHSSTY 330
K+ NF K ILNHSS Y
Sbjct: 487 KFANFKLKENILNHSSIY 504
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 133 QTFNLLLFTYYNVV 174
QTF+LL FTYY +
Sbjct: 299 QTFSLLFFTYYGTI 312
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 162 LQCCFRHGRDHALHFSQLISHMNRL 236
LQ R G+ H +H+ + H N L
Sbjct: 210 LQAADREGKQHIIHYERHFMHKNHL 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,679
Number of Sequences: 5004
Number of extensions: 67926
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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