Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_D01
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 200 6e-53
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 200 6e-53
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 146 7e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 146 7e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 146 7e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 87 6e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 40 9e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 1e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 40 1e-04
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 4.9
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 6.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 24 6.5
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 6.5
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 24 8.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 8.6
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 200 bits (488), Expect = 6e-53
Identities = 96/108 (88%), Positives = 99/108 (91%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 144 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPXAT 1
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL P AT
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRAT 108
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 200 bits (488), Expect = 6e-53
Identities = 96/108 (88%), Positives = 99/108 (91%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 144 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPXAT 1
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL P AT
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRAT 108
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 146 bits (355), Expect = 7e-37
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 144 IQKESTLHLVLRLRGG 97
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 146 bits (355), Expect = 7e-37
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 144 IQKESTLHLVLRLRGG 97
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 146 bits (355), Expect = 7e-37
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 144 IQKESTLHLVLRLRGG 97
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 146 bits (355), Expect = 7e-37
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 144 IQKESTLHLVLRLRGG 97
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 146 bits (355), Expect = 7e-37
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 144 IQKESTLHLVLRLRGG 97
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 146 bits (355), Expect = 7e-37
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 144 IQKESTLHLVLRLRGG 97
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 146 bits (355), Expect = 7e-37
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
MQIFVKTLTGKTITLEVE+SDTI NVK+KIQDKEGIPPDQQR IFAG QLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 144 IQKESTLHLVLRLRGG 97
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 87.4 bits (207), Expect = 6e-19
Identities = 38/77 (49%), Positives = 55/77 (71%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQR I+AG Q+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 144 IQKESTLHLVLRLRGGT 94
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 40.3 bits (90), Expect = 9e-05
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = -3
Query: 294 KTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYNIQKES-TLHL 118
K + +V A I +K KIQ ++ ++Q+ I++G L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 117 VLRLRGGTIEP 85
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 1e-04
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -3
Query: 324 MQIFVKTLTGKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYN 145
+ + +K + + V++ ++ +K I I ++QR I+AG L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 144 IQKESTLHLVLRL 106
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 39.9 bits (89), Expect = 1e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -3
Query: 297 GKTITLEVEASDTIXNVKAKIQDKEGIPPDQQRXIFAGXQLEDGRTLSDYNIQKESTL 124
GK LE+E ++T +K ++ +PP++Q+ I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 357 LSKHVFHRSNTMQIFVKTLTGKTITLE-VEASDTIXNVKAKIQDKEGIPP 211
LSK VF+ + + T+ G +++E V+ ++ N + + +PP
Sbjct: 346 LSKRVFYSVYVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLENDQVPP 395
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 161 LFQTITSRKNPHFTW 117
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 37 ANHFLTVILHGENAKGRFNXTSSKS 111
A+H +++HG + G FN S+S
Sbjct: 437 ASHSNPIMMHGNDFGGNFNNMQSRS 461
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 171 DGRTLSDYNIQKESTLHLVLRLR 103
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 81 GKVQXYLL*VSKPGEVWILSGCYSLK 158
G VQ L + G+VWI+ GC K
Sbjct: 446 GFVQRRLANAACTGKVWIIQGCRDQK 471
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 244 FDIXDSVGSFHLQCNGLPRKGFDEYLHCVAPMKNV 348
F +S+G + L C + FDEYL+ A ++NV
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY-HAEIQNV 2920
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,437
Number of Sequences: 5004
Number of extensions: 29998
Number of successful extensions: 96
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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