Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C24
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    28   1.7  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.0  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   3.0  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   7.0  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 197 LLVRRQISDGSHPNREHLQSTRRN 126
           LL+ +QIS+ SHP  + ++S  RN
Sbjct: 392 LLIAKQISENSHPVPQEIKSFHRN 415


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +3

Query: 189 NKQTMRSTSESKISPSCIQPAVKASHTISPIVRNRWKKLYTKNVLTKQELAF 344
           NK+   S SE K S     P     HTISP +     KLYT ++  K E  F
Sbjct: 426 NKEHSTSKSEEKSSELLKYPN---GHTISPGIIALSTKLYTGSIFPKCEKDF 474


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 153 PVRMASIRYLTPNKQTMRSTSESKISPSCIQPAVKASHTISPIVRNRWKKL-YTKNVLTK 329
           P++     YL  ++ +M + S S  +   +QP+ K     S   +   K L +T N LT 
Sbjct: 366 PIKAPKAEYLNQSRASMGNPSPSNWNNRLLQPSSKEQAVYSFQTQKNSKGLQFTSNELTN 425

Query: 330 QELAF-QAPQASKILNKSNN 386
               + Q P     + +SN+
Sbjct: 426 PTAKYSQLPNNIANIGESNS 445


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 605 AKWKTKQKLSCHLDNNVI*NSK 670
           AKW  K   S H+ + V+ NSK
Sbjct: 357 AKWNYKSSFSAHVSSEVLRNSK 378


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 115  TYHKFLRVDCRCSLFGWLPSDI*RRTSKQ*GAHLRAKSARVVSS 246
            TYH+ L+V C C+   WLP+    RTS         KSA + SS
Sbjct: 1025 TYHRNLKVLCICN-GAWLPATF--RTSLSTYFEKLKKSALISSS 1065


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,061
Number of Sequences: 5004
Number of extensions: 57418
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)