Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C23
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    29   0.94 
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    28   1.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   2.2  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   5.0  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.0  

>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 275 HQSNQSQCAEKNRKILFTGWQSFNFLLFHSQTVVIMQL 162
           H++ + +C    +K LF GW S +  L   QT+V  QL
Sbjct: 46  HETQEERCQNVKKK-LFEGWLSRDQFLKECQTIVRSQL 82


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 530 IKAKYIHNNYMTVLFVNFYGILDQYLSNDSN 622
           +K+ Y H N  ++  VNFYG  D+Y+ + S+
Sbjct: 661 VKSYYGHCNVESIKNVNFYGQNDEYVMSGSD 691


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 189  MKEQEIKRLPACEQNFPIFFGTL*LITLVISQIISHELIVKI 314
            +K+   KRL  C++N  ++  TL    LV+S   S E+ +K+
Sbjct: 1465 LKKTWRKRLEGCQKNVDVWHNTLRFRALVLSPQDSPEMWIKL 1506


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 165 LHNYHSLRMKEQEIKRLPACEQ 230
           + NYH+L  +E+E + +P C++
Sbjct: 211 MQNYHNLLYREEEREMIPYCQK 232


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 136  KELSYCQKLNCIITTV*E*KSKKLKDCQPVNKIFLFFS 249
            KE  +C+ L C+ T V       ++ CQ +  IF F S
Sbjct: 1109 KEFYFCEPLECVETLVQIYLENNVECCQCIWDIFSFLS 1146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,469
Number of Sequences: 5004
Number of extensions: 47233
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)