Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C23
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    29   2.7  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 605 LSNDSNIRR*QCNVTYFSA*HNLVYKKNSPHDNVYITYLK 724
           LS D  + +  CN  Y+   + + Y +  P+  VY+  LK
Sbjct: 116 LSGDYALDKTVCNENYYQCANGISYMRKCPYQQVYVPILK 155


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 599 QYLSNDSNIRR*QCNVTYFSA*HNLVYKKNSPHDNVY 709
           +Y  +D NI + +C+  +FS    + +++N P + V+
Sbjct: 177 EYCESDGNISKSECSNVFFSCSEGIAHRRNCPANLVF 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,756
Number of Sequences: 27780
Number of extensions: 259583
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)