Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C19
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   2.7  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   8.1  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   8.1  

>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 289 IVDPDRLSWDDILTQIDR*KLFLLFIFNTS 378
           I  PD   W D+ + I+R K   LF  N S
Sbjct: 384 IQSPDYKDWHDLYSYIERFKQLSLFFLNIS 413


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 292 VDPDRLSWDDILTQIDR*KLFLL 360
           VDP +  WDDIL  + +   F L
Sbjct: 224 VDPTKAQWDDILKTMQKKNHFAL 246


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 437 MKWEAELMNWKRILQIL*HKLV-----LKMKSRNSFHLSICV--RISSQDNLSGS 294
           +K E E  NWK  LQ+L  KL      L+M+ +++   S+ V  R+SS    S S
Sbjct: 200 IKLETEESNWKVRLQVLESKLATQDRKLRMQKKSTERKSLLVSPRVSSPKLFSPS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,788
Number of Sequences: 5004
Number of extensions: 37072
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)