Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C17
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    83   4e-17
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    50   3e-07
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   1.6  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   1.6  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.3  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   8.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.3  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 82.6 bits (195), Expect = 4e-17
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = -1

Query: 593 TDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 474
           TDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS  LKN
Sbjct: 140 TDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 22/39 (56%), Positives = 26/39 (66%)
 Frame = -1

Query: 593 TDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 477
           TD L L  L++R W +Q TCA +GDGL EGL WLS   K
Sbjct: 144 TDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 269 LKYCFSKYYINYVYLNAINGMQINSVQ 189
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 584 LGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 477
           L +   ++ +W I +  A +G  + + + WL+N LK
Sbjct: 142 LNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 505 PSYSPSPEVAHVAWMYQL 558
           P+ SP PEV+H  W+  L
Sbjct: 16  PNSSPDPEVSHKLWVSSL 33


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 92  PQLYILYFVQRHRGSNTRRMIISWTLTPLSTSIAPN*FAFHLLRLNKHS 238
           P++++   +  HR S TR  II W +  L        F F LLR N+++
Sbjct: 210 PEVWLFNQIFSHRNSLTRIKIIIWWIICLGC------FIFILLRSNRNN 252


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 524 GDGLYEGLDWLSNQLKNAN 468
           GD   E +DWL + L+++N
Sbjct: 587 GDNTSENIDWLKHSLRDSN 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,982
Number of Sequences: 5004
Number of extensions: 50651
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)