Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C16
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...   102   4e-23
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    30   0.38 
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    28   1.2  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   2.7  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    26   6.1  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   8.1  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   8.1  

>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score =  102 bits (245), Expect = 4e-23
 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 7/213 (3%)
 Frame = -1

Query: 713 YEHXFRALHLKVHKVEAPSGDMGGSFSHEWQLAATSGEDQIKVCPSC---SHAALLD--- 552
           Y   F+ + L    V+A +G++GG+ SHE+      GED I  CPSC   +++ +LD   
Sbjct: 186 YHTFFKEVGLPFVMVKAATGNIGGNLSHEFHYRHPVGEDVIYTCPSCHYSTNSEMLDLSK 245

Query: 551 -HEGARCQSCRKDAEILQSIEVGHTFILGTKYSEALEATYCPPSGPPLPIIMSCYGIGIT 375
                 C +C        +IEVGH F LG  YS    AT    +   + + M CYGIG++
Sbjct: 246 TSSDISCPNCNDQLTSTTAIEVGHAFYLGKIYSSKFNATVEVKNKQEV-LHMGCYGIGVS 304

Query: 374 RXXXXXXXXXXXXXXLRWPKAIAPYSAIIIGPKEGSKEWNDHGMDQVKLVYDALNSVPAL 195
           R              L WP +IAP+  +++         +D+ +   + VYDA  +V   
Sbjct: 305 RLIAAVAHVTKDAKGLVWPSSIAPWKVLVV-------PTSDNHIQSAETVYDATANVVGF 357

Query: 194 RSDVLVDDRHGLTIGKRLLMADKMGYPIVIACG 96
             +VL++DR     G ++  A+ +GYP VI  G
Sbjct: 358 -DNVLLEDRQNRAFGYKMRDAELIGYPFVIVVG 389


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 493 SILCKISASFRQLWHLA--PSWSNSAACEQDGHTFIW---SSPEVAASCHSCEKLPP 648
           ++ C++      +W LA  P+ +  A+ + DG+ F+W   SS E  A+  S   L P
Sbjct: 458 ALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDVATIDSTNILRP 514


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +3

Query: 78  LLLVFFTARYYYRISHFISHEQSLSDGEAVAVVDQHIGPQSRYTIQSIVDQLNLVHAVII 257
           L+LV  T  ++Y  S   S   +      + +V   +GP S    +S V+ LN      +
Sbjct: 34  LILVLSTVIFFYFFSSHKSKGTNEKPKFVIMMVSDGMGPGSLSMTRSFVETLNDKEGYRL 93

Query: 258 PFFRALLGPNDDCRIRGNSFRPTQSFLG 341
           P    L+G +   R R +S   T S  G
Sbjct: 94  PLDEHLIGSS---RTRSSSSLITDSAAG 118


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 496 ILCKISASFRQLWHLAPSWSNSAACEQDGHTFIWSSPEVAASCHSCEKLPPISPDGASTL 675
           +LC +S   + L+H A ++      E +GH  I  S    +   S E L P   +   TL
Sbjct: 361 VLC-VSPGLKHLYHAAQAYDVGVFFEANGHGTILVSHAALSKIISHEVLSPAQFNALKTL 419

Query: 676 CT 681
            T
Sbjct: 420 KT 421


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 170 GRRPAHRTSEPVHYSKHRRPT*PGPCRD 253
           G R  HR S+P HY  H+    PG  ++
Sbjct: 106 GFRDIHRPSKPRHYLAHKVMAKPGKLKN 133


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 589 FIWSSPEVAASCHSCEKLPPISPDGASTLCT 681
           +  S P  +  CH+C+    IS D    LCT
Sbjct: 78  YFGSDPSESIVCHNCKGNGHISKDCPHVLCT 108


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 141 QSLSDGEAVAVVDQHIGPQSRYTIQSIVDQLNLV 242
           Q L DG  +A  + H G  +R   Q I D++N++
Sbjct: 22  QRLKDGALLAQKEIHFGNITRQEKQYIADEVNIL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,165
Number of Sequences: 5004
Number of extensions: 62531
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)