Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_C16
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0588 - 26412487-26413887 31 0.69
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 30 2.1
09_01_0097 - 1450544-1452058 29 3.7
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 3.7
02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668 29 4.8
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 28 6.4
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 28 6.4
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 28 8.5
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 28 8.5
02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475 28 8.5
>04_04_0588 - 26412487-26413887
Length = 466
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 580 GHTFIWSSPEVAASCHSCEKLPPISPDGAST 672
G T + SS AASC S PP +PD A+T
Sbjct: 284 GRTSVSSSAAAAASCSSSSLSPPETPDDANT 314
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 RFPRP-SDSSGISLPHGPTAPRASRTDTLLSGLRQRSPRAATRVRS 640
R +P S S + P PT PRA+R D L SG + R RS
Sbjct: 134 RLAKPLSSCSAAATPPAPTPPRAARHDVLGSGTANYGHGSIVRSRS 179
>09_01_0097 - 1450544-1452058
Length = 504
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 272 GSKEWNDHGMDQVKLVYDALNSVPALRSDVLVDDRHGL 159
G K W D G D +VY L S+ L S+ L + HGL
Sbjct: 288 GCKAWLD-GQDDRSVVYVNLGSLTVLSSEQLAEFLHGL 324
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 638 FSHEWQLAATSGEDQIKVC---PSCSHAALLDHEGARCQSCRKDAEILQSI 495
F+H W+ A + +K+C P SH D ++ +K+AE+++ +
Sbjct: 1061 FAHRWEKVAQNSLTPLKICCQAPGISHLLFADDTLLFFKAEKKEAEVVKEV 1111
>02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668
Length = 480
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 415 GGPEGGQYVASRASLYFVPRMNV*PTSILCKI 510
GGP G Q+ A FV N+ TSI+C I
Sbjct: 392 GGPGGSQFGKQIAGALFVTAWNIVITSIICVI 423
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Frame = -1
Query: 575 CSHAALLDHEGARCQSCRKDAEILQS----IEVGHTFILGTKYSEALEATYCPPSGPPLP 408
C H ++ E ++C SCR+ + G +AL A P G P
Sbjct: 626 CQHKSVSGMEQSQCSSCRQPFGFTRKRHNCYNCGLVHCHSCSSKKALRAALSPNPGKPYR 685
Query: 407 IIMSCY 390
+ SCY
Sbjct: 686 VCDSCY 691
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -3
Query: 699 PRPTLESAQSRSSVGRYGRKLLTRVAARGDLWRRPDKSVSVLLARGAVGP*GSEMPELSE 520
P+ E A + + R R AR D+ R +S L + G +GP S+ P
Sbjct: 372 PKLVFEKADEMAQIFRQ-RIAQAEAMARADMLRFQPESGLTLSSEGILGPLSSDTPSEGS 430
Query: 519 GRG 511
G G
Sbjct: 431 GEG 433
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 707 HXFRALHLKVHKVEAPSGDMGGSFSHEWQLAATSGEDQIKVCPSCSHAALLDHEGARCQ 531
H R +K ++AP SF+ W +G+D++ V S + A DHE R Q
Sbjct: 303 HKCRDDVVKALNLDAPCETNNCSFNGVWNGGGGAGQDELYVATSFYYMA-SDHEQGRLQ 360
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +2
Query: 410 AGGAPRGGSTSPPEPHCTLCPG*TCDRPLYFARFPRPSDSSGISLPHGPTAPRASRTD 583
A PRG PP PH P A P P + G++ PH + R D
Sbjct: 129 AQALPRGPGQEPPPPHVPKAAPPPPPPPPPHAP-PGPPPTKGVATPHAKKLAKQHRVD 185
>02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475
Length = 392
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 676 TKSKLRRAIWEEASHTSGSSRRPLAKTR*KCVRPARTRRCWTMRERDARAVGRT 515
TK L A+ AS +SG P+ C++ R R C + E+ AVG+T
Sbjct: 142 TKQYLELAVAVLASSSSGDMMIPITS----CLKSLRLRDCIKISEKGLVAVGKT 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,874,260
Number of Sequences: 37544
Number of extensions: 572175
Number of successful extensions: 2037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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