Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C13
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   2.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   4.8  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   6.3  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.3  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    24   8.4  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     24   8.4  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    24   8.4  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 307 NYQILRTGCFPYIKYHCSRKKAEDLNMSDKFMRIIKVANLG 185
           N QI +  C P +K HCS    + +  + K  R  ++  +G
Sbjct: 141 NTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLTPVG 181


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 105 YQYTFCFQKIKDLC 64
           Y Y+FCFQK   +C
Sbjct: 119 YGYSFCFQKFLKIC 132


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 385  SMVPTYSYVKDDQFGMSNFNWK 320
            +MVP Y +V DDQF  +N++ K
Sbjct: 1163 AMVPYYPHVDDDQF--NNYDMK 1182


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 166 GLAATQLIRHEELVHTSKGPVPIYFLL 86
           GL A+Q+   EE V ++    P+YFLL
Sbjct: 111 GLPASQVPAAEEEVESTPKAKPLYFLL 137


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 162 RPYSKQGIPKFATFIILINLS 224
           RPYSK  +  F+T +I  N S
Sbjct: 46  RPYSKDFLELFSTMVISTNFS 66


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 52  GVLIAKILYLLEAKSILVLALCL 120
           G+L   +LYL+E KS+ + +L L
Sbjct: 567 GILSIALLYLIEKKSVWLASLIL 589


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 40  CLQYGVLIAKILYLLEAKSILVLALC 117
           CL    +I+  L++ + K++  LALC
Sbjct: 365 CLDISEMISSYLHVEDEKNVFYLALC 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,353
Number of Sequences: 5004
Number of extensions: 38602
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)