Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C13
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical ...    30   0.77 
Z19152-4|CAA79538.2|  455|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AY533305-1|AAS21307.1|  455|Caenorhabditis elegans BRE-3 protein.      28   2.4  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   4.1  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical ...    27   7.2  

>AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical
           protein T19A6.4 protein.
          Length = 344

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 111 PLLV*TSSSCLISWVAARPYSKQGIPKFATFIILINLSDIF---KSSAFFL 254
           P+L+ ++ SCL  W   R Y   G+PK     +++N   I      S+FFL
Sbjct: 87  PILIWSTVSCLTGWATTR-YGLFGVPKGIPSSVILNYIGIIVLVVGSSFFL 136


>Z19152-4|CAA79538.2|  455|Caenorhabditis elegans Hypothetical
           protein B0464.4 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 49  YGVLIAKILYLLEAKSILVLALCLC 123
           YG++    LYLL   ++LVL  CLC
Sbjct: 44  YGLIWTVCLYLLRFTALLVLPQCLC 68


>AY533305-1|AAS21307.1|  455|Caenorhabditis elegans BRE-3 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 49  YGVLIAKILYLLEAKSILVLALCLC 123
           YG++    LYLL   ++LVL  CLC
Sbjct: 44  YGLIWTVCLYLLRFTALLVLPQCLC 68


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 35  NNVYSMVF*SQRSFIFWKQKVYWYWPFA 118
           NN+Y+++  S   F FWK ++ W   +A
Sbjct: 16  NNIYNILNNSLSFFKFWKMRINWIHHYA 43


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
            protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256  NSDILYME-NNQFLIFDSWNYQPSN*NLTFQTDHLSHNCR*VP*IIH 393
            +SD+  ME  N  L+F     +PS+ N+     H+S  C+ +  +IH
Sbjct: 928  HSDVNKMECRNLALMFGPSIVRPSDDNMATMVTHMSDQCKIIETLIH 974


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256 NSDILYME-NNQFLIFDSWNYQPSN*NLTFQTDHLSHNCR*VP*IIH 393
           +SD+  ME  N  L+F     +PS+ N+     H+S  C+ +  +IH
Sbjct: 806 HSDVNKMECRNLALMFGPSIVRPSDDNMATMVTHMSDQCKIIETLIH 852


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 340  MSNFNWKVGNSNYQILRTGCFPYIKYHCSRKKAEDLNMSDKFMRIIK 200
            + N   K  N  ++I     FP   +H    K+ D  ++++FM + K
Sbjct: 891  IKNIYLKYQNKKFRIRVPELFPVSSFHIYADKSTDDKLTNQFMEVFK 937


>AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical
           protein Y54E5A.3 protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 165 PYSKQGIPKFATFIILINLSDIFK 236
           PY+ QGIP F++ +  I L DI +
Sbjct: 161 PYAHQGIPLFSSLLKRIVLEDILR 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,074,520
Number of Sequences: 27780
Number of extensions: 206524
Number of successful extensions: 367
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)