Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_C11
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1636 + 28290642-28291574 32 0.34
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 31 1.1
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 29 3.2
11_06_0595 - 25368114-25370051 29 4.2
11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755 29 4.2
08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505 29 4.2
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 29 4.2
08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437 29 4.2
07_01_1124 + 10392909-10392974,10393037-10393455,10393503-103936... 29 4.2
06_01_1156 + 9788711-9788759,9788910-9789142,9790146-9791919,981... 29 4.2
04_04_0356 - 24658223-24660613 29 4.2
04_03_0245 - 13331603-13332111,13332653-13333025 29 4.2
01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770... 28 5.6
07_03_0511 - 18911673-18911713,18922395-18923361,18926841-189276... 28 7.4
05_07_0168 + 28122429-28122650,28122651-28122725,28123066-281231... 28 7.4
05_02_0002 - 5476472-5476485,5486918-5488655 28 7.4
05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878 28 7.4
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 28 7.4
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 27 9.8
>07_03_1636 + 28290642-28291574
Length = 310
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 229 PQSELLPVA-PPMPEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEKWTLFRAPD 53
PQ++ P+A PP P RA ++ A P V K + ST +PAK W + P
Sbjct: 196 PQTQTQPLAKPPAPATPSRAGGHVAALAPPA--VAKA--DRHVSTPSPAKADWQMVGTPT 251
Query: 52 GSKSKNKREANE 17
+K +K + E
Sbjct: 252 ATKGASKHGSLE 263
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R +T R
Sbjct: 477 RRFLAANHPVRKKGKHFEHKADYRKKTKHR 506
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 123 YKS-RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
YK RRF A P +K G +FEH+ R + R
Sbjct: 456 YKGHRRFLAANHPVRKKGKHFEHKADHRTKPKHR 489
>11_06_0595 - 25368114-25370051
Length = 645
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 21 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 50
>11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755
Length = 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 343 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 372
>08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505
Length = 772
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 407 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 436
>08_02_0204 -
14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 812 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 841
>08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437
Length = 667
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 491 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 520
>07_01_1124 +
10392909-10392974,10393037-10393455,10393503-10393657,
10393792-10394247,10394379-10395298
Length = 671
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 307 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 336
>06_01_1156 +
9788711-9788759,9788910-9789142,9790146-9791919,
9819418-9819743
Length = 793
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 571 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 600
>04_04_0356 - 24658223-24660613
Length = 796
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 477 RRFLAANHPVRKKGKHFEHKADHRTKPKHR 506
>04_03_0245 - 13331603-13332111,13332653-13333025
Length = 293
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 218 RRFLATNHPVRKKGKHFEHKADHRTKPKHR 247
>01_07_0099 -
41076056-41076059,41076135-41076175,41076937-41077041,
41077476-41077552,41078773-41078944,41079099-41079194,
41080268-41080465
Length = 230
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -1
Query: 424 SDTEVNPDGFSFGYETDNGISAQSSGSLKKV 332
S T+V P FS G T NG SAQ G+ +KV
Sbjct: 77 SGTQVLPRWFSTG--TSNGSSAQQEGATRKV 105
>07_03_0511 -
18911673-18911713,18922395-18923361,18926841-18927659,
18928152-18928757
Length = 810
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R + R
Sbjct: 234 RRFLAANHPIRKKGKHFEHKADHRMKPKHR 263
>05_07_0168 +
28122429-28122650,28122651-28122725,28123066-28123122,
28123248-28123411,28123672-28123806,28123908-28124010,
28124165-28124264,28124348-28124556
Length = 354
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 406 PDGFSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTAD 245
P FSFGY T +S S ++ ++ +D L Q E G + F D
Sbjct: 201 PFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVD 254
>05_02_0002 - 5476472-5476485,5486918-5488655
Length = 583
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH+ R R
Sbjct: 477 RRFLAANHPVRKKGKHFEHKADHRTNPKHR 506
>05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878
Length = 402
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 113 EDSEHNDPRQRKVDFISSTRREQEQEQARGK 21
+D E ND D+ S E+E+++ RGK
Sbjct: 342 DDDEENDDNDSDSDYDESDEEEEERKRKRGK 372
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -2
Query: 264 SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 148
+S Q ++++ +H S Q+ +C +PS+A + +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 114 RRFRAQRPPPKKSGLYFEHQTGARARTSER 25
RRF A P +K G +FEH R + R
Sbjct: 372 RRFLAANHPVQKKGKHFEHTADHRTKPKHR 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,404
Number of Sequences: 37544
Number of extensions: 307059
Number of successful extensions: 897
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -