Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C08
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0848 + 11765607-11766143                                         29   1.8  
03_04_0024 + 16556026-16556588,16556757-16556868                       29   2.4  
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161...    29   3.1  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    28   4.1  
02_01_0230 - 1532648-1532768,1533359-1533476,1533540-1533593,153...    28   5.4  
09_01_0037 - 604001-604957                                             27   9.5  
08_01_0877 - 8607790-8608083,8608174-8608356,8608495-8608665,860...    27   9.5  

>03_02_0848 + 11765607-11766143
          Length = 178

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 261 WQKKTPESTQEGVQGDGRRRSSPQTE 184
           W  K P +   GV GDGRR++ P  +
Sbjct: 93  WSNKKPTTPSVGVIGDGRRKAVPDLD 118


>03_04_0024 + 16556026-16556588,16556757-16556868
          Length = 224

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 98  ISLFHPG*VDLFELPSPWLPEVPSVVLLASVCGLDRL-RPSPWTPSWV 238
           + + H G V    LP P  P  PSV  + S      +  P PW PSW+
Sbjct: 47  VEVHHGGLVAPSPLPDP-PPPSPSVAAIFSFSSSSLIFPPPPWRPSWL 93


>11_01_0204 -
           1612505-1612636,1612809-1612926,1613050-1613162,
           1613640-1613712,1613797-1613936,1614059-1614129,
           1614262-1614430,1614625-1614690,1615081-1615179,
           1615298-1615471,1615745-1615823,1615929-1616035,
           1616395-1616439
          Length = 461

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 110 HPG*VDLFELPSPWLPEVPSVVLLASVCGLDRLRPS 217
           H G  DL EL   W P++PS+++  +  G + L PS
Sbjct: 417 HQGQKDLKELH--WHPQIPSMIISTAADGFNMLMPS 450


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 161 VPSVVLLASVCGLDRLRPSPWTPSWVLSGVF 253
           +PSV     VCG+ R+ PSP  P  VL G F
Sbjct: 200 MPSVAASPVVCGMKRIDPSPSDP--VLKGRF 228


>02_01_0230 -
           1532648-1532768,1533359-1533476,1533540-1533593,
           1533788-1533880,1533960-1534152,1534361-1534461,
           1534561-1534600,1534683-1534730,1535341-1535523,
           1535623-1535688
          Length = 338

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 128 LFELPSPWLPEVPSVVLLASVCGLD-----RLRPSPWTPSWVLSGVFFCHLHGQ 274
           L EL   +LP++ +V  + +  GL      R  P PW     + G FFC LH Q
Sbjct: 269 LAELSKTFLPKLETVYYIHNFKGLKGGTLFRCYPGPWKVLRNIGGSFFC-LHEQ 321


>09_01_0037 - 604001-604957
          Length = 318

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 140 PSPWLPEVPSVVLLASVCGLDRLRPSPWTPS 232
           P P  P   S+ L  S+ GLD   P P TPS
Sbjct: 194 PPPPPPPATSLSLSLSLPGLDHPHPDPSTPS 224


>08_01_0877 -
           8607790-8608083,8608174-8608356,8608495-8608665,
           8608765-8608925,8609012-8609093,8609197-8609229,
           8609359-8609597,8609686-8609850,8609955-8610204,
           8610314-8611414,8611841-8611960,8612626-8612691
          Length = 954

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 200 DRLRPSPWTPSWVLSGVFFCHLHGQTWLYAETLI 301
           DR++PSP   SW L  +F   +   T+L   T++
Sbjct: 694 DRVKPSPHPDSWKLPEIFITGIVYGTYLAVMTVL 727


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,648
Number of Sequences: 37544
Number of extensions: 198318
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)