Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_C05
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.45 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.78 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   5.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   9.6  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +1

Query: 46  KLFSC-RLHYRPQRFHHLNSFRRLH---YPFRC 132
           K F C   H R  R HHL +  RLH    P+ C
Sbjct: 8   KPFECPECHKRFTRDHHLKTHMRLHTGEKPYHC 40


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = -3

Query: 238 GVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGG 59
           G+ D+  P   E  E+++ + LD+ D+ +    L+D     +DV+   +DE V+   +  
Sbjct: 311 GMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVK--CEDERVISIPDKE 368

Query: 58  KKRVFNTKTLKDQNGQD 8
                N +T+   NG +
Sbjct: 369 ITVPSNEETIDINNGAE 385


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 161 IARVQKYNLLRFHNLTSSWFLFIFDAEHFFQ 253
           +A V   N + F  L S   +  +++EHFF+
Sbjct: 310 VAEVMDRNGVLFFGLLSDLAIGCWNSEHFFE 340


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 160 LKKSKKVLEDIEKDNEDVEMSSDDENVV 77
           L K++    D EK  ED+EM +  EN++
Sbjct: 495 LSKAELDKMDKEKKLEDLEMGTPLENIL 522


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 210 PAGFSSSLTPSIFFNRANSFTAYRSRLIALHFRFHLLL 323
           P G  +S+ P   + +A  +T   +    L F  H++L
Sbjct: 29  PPGEINSINPINVYTKAYIYTIKSNMAKTLQFDVHMML 66


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 121 DNEDVEMSSDDENVVVDSEGGKKRVF-NTKTLK 26
           DN++V M + +     DS+  K ++F N + +K
Sbjct: 178 DNQEVSMENTENKSCTDSDIEKYKMFCNLENVK 210


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 5/20 (25%), Positives = 11/20 (55%)
 Frame = -2

Query: 407 IAFHAITFKSAWRCFKIFLF 348
           +    + F + W  FK+++F
Sbjct: 114 VGLAVLPFSATWEVFKVWIF 133


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 311 EAKMQGDQTRTVCG 270
           E   +G +TRTVCG
Sbjct: 620 EGLSEGMRTRTVCG 633


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 112 LHYPFRCLLILFCFSLNRPRPEI 180
           L Y     +  FC +   PRPEI
Sbjct: 32  LDYMLGRKITFFCMATGFPRPEI 54


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 133 DIEKDNEDVEMSSDDENVVVD 71
           +IE DN        +EN +VD
Sbjct: 79  EIESDNSKEVNDKKEENFIVD 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,810
Number of Sequences: 438
Number of extensions: 2225
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)