Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_C04
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 48 1e-05
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 37 0.015
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 37 0.015
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 37 0.015
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 33 0.31
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 33 0.31
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 33 0.31
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 33 0.31
Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical pr... 32 0.55
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 31 0.96
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 31 0.96
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 31 0.96
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 31 1.3
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p... 29 3.9
AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical ... 28 8.9
AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = -3
Query: 795 KMIGPKLDEIAAXXXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLDEFSGAN 619
+MI P+++E+AA + EY INSMPTF+ + +G K D+FSGAN
Sbjct: 36 QMIKPRVEELAAEHKDRLSILKIDVDECDGVGEEYEINSMPTFLLIVDGIKKDQFSGAN 94
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -3
Query: 693 YNINSMPTFVFVKNGKKLDEFSGAN 619
YNI++MPTF+F+KN +++D GAN
Sbjct: 71 YNISAMPTFIFLKNRQQVDMVRGAN 95
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -3
Query: 693 YNINSMPTFVFVKNGKKLDEFSGAN 619
YNI++MPTF+F+KN +++D GAN
Sbjct: 71 YNISAMPTFIFLKNRQQVDMVRGAN 95
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein.
Length = 542
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -3
Query: 693 YNINSMPTFVFVKNGKKLDEFSGAN 619
YNI++MPTF+F+KN +++D GAN
Sbjct: 7 YNISAMPTFIFLKNRQQVDMVRGAN 31
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 699 SEYNINSMPTFVFVKNGKKLDEFSG 625
S+Y++ MPTF+F KNG ++ G
Sbjct: 74 SKYDVKMMPTFIFTKNGDAIEALEG 98
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 699 SEYNINSMPTFVFVKNGKKLDEFSG 625
S+Y++ MPTF+F KNG ++ G
Sbjct: 73 SKYDVKMMPTFIFTKNGDAIEALEG 97
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 699 SEYNINSMPTFVFVKNGKKLDEFSG 625
S+Y++ MPTF+F KNG ++ G
Sbjct: 73 SKYDVKMMPTFIFTKNGDAIEALEG 97
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 699 SEYNINSMPTFVFVKNGKKLDEFSG 625
S+Y++ MPTF+F KNG ++ G
Sbjct: 74 SKYDVKMMPTFIFTKNGDAIEALEG 98
>Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical
protein B0024.9 protein.
Length = 119
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 789 IGPKLDEIAAXXXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLDEFSG 625
+GP+L+E +A +Y I+++PT KNG+K+ FSG
Sbjct: 48 LGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSG 102
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.96
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -3
Query: 702 ASEYNINSMPTFVFVKNGKKLDEFSGAN 619
+SE +NSMPTF+ ++G ++++ GA+
Sbjct: 67 SSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.96
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -3
Query: 702 ASEYNINSMPTFVFVKNGKKLDEFSGAN 619
+SE +NSMPTF+ ++G ++++ GA+
Sbjct: 67 SSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.96
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -3
Query: 702 ASEYNINSMPTFVFVKNGKKLDEFSGAN 619
+SE +NSMPTF+ ++G ++++ GA+
Sbjct: 67 SSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 702 ASEYNINSMPTFVFVKNGKKLDEFSGAN 619
A+ Y +N+MPTF+ NG+K GA+
Sbjct: 67 AATYGVNAMPTFIAFVNGQKKATIQGAD 94
>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
protein C28H8.3 protein.
Length = 1714
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 401 TTEPIFFAFQRLQTLKINIFKFITDVKNIFSSF 499
TTE + F+ ++L +K N+ +F KNI S F
Sbjct: 76 TTEVLNFSLEQLSMMKKNLAQFPCSYKNIISEF 108
>AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical
protein D2063.3a protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 693 YNINSMPTFVFVKNGKKLDEFSG 625
+ I + PT VF NGK++D G
Sbjct: 69 FKITAAPTLVFFSNGKEVDRIDG 91
>AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical
protein D2063.3b protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 693 YNINSMPTFVFVKNGKKLDEFSG 625
+ I + PT VF NGK++D G
Sbjct: 69 FKITAAPTLVFFSNGKEVDRIDG 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,288
Number of Sequences: 27780
Number of extensions: 247485
Number of successful extensions: 566
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -