Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B22
         (749 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.35 
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      26   1.1  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    24   5.8  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   5.8  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   7.6  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   7.6  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 488  LSCLVINFTSEGKKSLTISWCPADHNLSAYANTL--GSRAR 604
            +  ++ +   E KK L ++W   D N  +  +TL  G++AR
Sbjct: 1013 IQAIITDLDEEKKKKLKVAWSEVDENFGSIFSTLLPGTQAR 1053


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 301 HSMFSVHYFIQQLVILPYRDKLPAHSVTS 387
           H + S+H ++Q+ V+ P+  K  AHS+ S
Sbjct: 337 HELGSLHDYLQKRVLNPHMLKTLAHSLAS 365


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 605 CGHENLTCSHTRTSCG 558
           CG EN T  HT   CG
Sbjct: 922 CGDENQTAEHTIFICG 937


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 214 EADACSAGDRQRLTHREPRVRAESEAGR 131
           + D   AG +Q L+HR  R   ++ AGR
Sbjct: 271 QPDENPAGAQQHLSHRPQRSTRKNPAGR 298


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 181 RLTHREPRVRAESEAGRARGQLRRPPATGETTETSMVXPG 62
           R TH   R       GR+R Q +R   T E+T      PG
Sbjct: 339 RATHAS-RSATRMSRGRSRSQTKRYSQTVESTNAPSRSPG 377


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 559  PQLVRVCEHVRFSCPQ--ESVDQLLD 630
            P +V   EHV F CP+  E   +LLD
Sbjct: 960  PGVVEGVEHVMFECPRFAEVRSELLD 985


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,545
Number of Sequences: 2352
Number of extensions: 14107
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)