Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B22
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical pr...    29   3.5  
L16559-8|AAA27929.2|  643|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical
           protein F42E8.1 protein.
          Length = 411

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -3

Query: 702 VSTGXYDKAVTITKSLEH--DNVGFMIEELIDRLLRAREPNVFAYADKLWSAGHHDIVND 529
           + T  Y   V     LE   +N   +I  + D L +  EP++   AD +  +G    +++
Sbjct: 48  IQTCDYGTTVAFGIRLERFDENSETIIRFMKDLLNQQDEPSIVEIADDMAHSGEKFTMDE 107

Query: 528 FFPSEVKLITKQERVKIIGR 469
            +   V    K ER++ IG+
Sbjct: 108 IWQGFVNNFPKNERIQAIGK 127


>L16559-8|AAA27929.2|  643|Caenorhabditis elegans Hypothetical
           protein C06E1.9 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -3

Query: 423 NDRLAWGDSKDKTSHRVSWKLIPVWENNKLLYKIMNTEHTMYLKLD-VNVDGYGDRQAWG 247
           +D + W  S +  SH++S KL    +   L+    +   ++  K D         + +W 
Sbjct: 13  SDLVLWEASCETISHQISLKLAR--KEGGLMEIFNSVVASLPRKSDSFRFSAISSKTSWE 70

Query: 246 SNNSNEKRHLWKLTPVVLETG 184
           S + N   +L K  PV+LE G
Sbjct: 71  SAHRNLLENLTKTVPVLLENG 91


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 484 ENHRKILRSSSEAGRQCRLVQRSP 413
           ENH +I+R +  AGR+ +++Q  P
Sbjct: 160 ENHAEIVRGTIFAGREAKIMQNDP 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,338
Number of Sequences: 27780
Number of extensions: 315664
Number of successful extensions: 985
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)